Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01719 ATGGATCCCTTAGAGGATTCTAGTTGTTGGGATTTTCTTGATTGCTCCTTCTTCGTCGACGGCGACAATCTTATTAACCCTTCGCTCGATCCTTTGGATAGTTGTGCGGAGGCTGATGTTTTAGCCGGGCGTGTTGAATCTGAAGAAAACGATTGTTCCCGGAAGAGGGCACGAGATGGGTCGTGCGCTGGACCAAGTTCAAAAGCTTGTCGCGAGAGGTTGCGGAGGGAGAAATTAAATGACAGGCAAGCATTTTCTGTTATGTTTCTAGATTTGAGCATTGCTTTAGAACCTAGTAGACCTACCAAAACTAACAAGCCGGCCATACTTGATGATGCCATTAGATTGTTAAATCAACTTAAGACTGAAGCCGAAGACCTCAAACAAACTAATGAAAAGTTGCGAGAAGAAGTGGAGTGTTTAAAGGCAGAGAAAAATGATCTTCGGAAAGAGAAAATCATTCTGAAGGAAGACAAAGAACGAATCGAACAACAGTTGAAATCTATAGCCATTCCACCTCCAGGGCTTATCCCTGGTCATCCAGCTGCATATCATGCTGCTCCAGGTAAGATGGCTGTTTTTCCTGGCTATGGTTTGATCCCAATGTGGCAGTATCTTCCTCCATCAATACGAGATACATCTCAAGATCATGAGCTCAGGCCCCCTGCTGCATAG 675 44.59 MDPLEDSSCWDFLDCSFFVDGDNLINPSLDPLDSCAEADVLAGRVESEENDCSRKRARDGSCAGPSSKACRERLRREKLNDRQAFSVMFLDLSIALEPSRPTKTNKPAILDDAIRLLNQLKTEAEDLKQTNEKLREEVECLKAEKNDLRKEKIILKEDKERIEQQLKSIAIPPPGLIPGHPAAYHAAPGKMAVFPGYGLIPMWQYLPPSIRDTSQDHELRPPAA 224
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 24648201 24650260 - Lsi05G017190.1 Lsi05g01719 664211
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01719 224 CDD bHLH_AtILR3_like 68 149 - -
Lsi05g01719 224 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 142 IPR036638 GO:0046983
Lsi05g01719 224 PANTHER TRANSCRIPTION FACTOR BHLH104 1 224 - -
Lsi05g01719 224 Gene3D - 66 153 IPR036638 GO:0046983
Lsi05g01719 224 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 63 120 IPR011598 GO:0046983
Lsi05g01719 224 Coils Coil 110 165 - -
Lsi05g01719 224 PANTHER BHLH TRANSCRIPTION FACTOR 1 224 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01719 Lsi-Chr5:24648201 Lsi10g00160 Lsi-Chr10:2566969 5.27E-46 dispersed
Lsi05g01719 Lsi-Chr5:24648201 Lsi05g00630 Lsi-Chr5:7771313 9.62E-44 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01719 - - csv:101210812 380.948