Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi05g01719 | ATGGATCCCTTAGAGGATTCTAGTTGTTGGGATTTTCTTGATTGCTCCTTCTTCGTCGACGGCGACAATCTTATTAACCCTTCGCTCGATCCTTTGGATAGTTGTGCGGAGGCTGATGTTTTAGCCGGGCGTGTTGAATCTGAAGAAAACGATTGTTCCCGGAAGAGGGCACGAGATGGGTCGTGCGCTGGACCAAGTTCAAAAGCTTGTCGCGAGAGGTTGCGGAGGGAGAAATTAAATGACAGGCAAGCATTTTCTGTTATGTTTCTAGATTTGAGCATTGCTTTAGAACCTAGTAGACCTACCAAAACTAACAAGCCGGCCATACTTGATGATGCCATTAGATTGTTAAATCAACTTAAGACTGAAGCCGAAGACCTCAAACAAACTAATGAAAAGTTGCGAGAAGAAGTGGAGTGTTTAAAGGCAGAGAAAAATGATCTTCGGAAAGAGAAAATCATTCTGAAGGAAGACAAAGAACGAATCGAACAACAGTTGAAATCTATAGCCATTCCACCTCCAGGGCTTATCCCTGGTCATCCAGCTGCATATCATGCTGCTCCAGGTAAGATGGCTGTTTTTCCTGGCTATGGTTTGATCCCAATGTGGCAGTATCTTCCTCCATCAATACGAGATACATCTCAAGATCATGAGCTCAGGCCCCCTGCTGCATAG | 675 | 44.59 | MDPLEDSSCWDFLDCSFFVDGDNLINPSLDPLDSCAEADVLAGRVESEENDCSRKRARDGSCAGPSSKACRERLRREKLNDRQAFSVMFLDLSIALEPSRPTKTNKPAILDDAIRLLNQLKTEAEDLKQTNEKLREEVECLKAEKNDLRKEKIILKEDKERIEQQLKSIAIPPPGLIPGHPAAYHAAPGKMAVFPGYGLIPMWQYLPPSIRDTSQDHELRPPAA | 224 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 24648201 | 24650260 | - | Lsi05G017190.1 | Lsi05g01719 | 664211 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi05g01719 | 224 | CDD | bHLH_AtILR3_like | 68 | 149 | - | - | |
| Lsi05g01719 | 224 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 68 | 142 | IPR036638 | GO:0046983 | |
| Lsi05g01719 | 224 | PANTHER | TRANSCRIPTION FACTOR BHLH104 | 1 | 224 | - | - | |
| Lsi05g01719 | 224 | Gene3D | - | 66 | 153 | IPR036638 | GO:0046983 | |
| Lsi05g01719 | 224 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 63 | 120 | IPR011598 | GO:0046983 | |
| Lsi05g01719 | 224 | Coils | Coil | 110 | 165 | - | - | |
| Lsi05g01719 | 224 | PANTHER | BHLH TRANSCRIPTION FACTOR | 1 | 224 | IPR044818 | GO:0003700|GO:0006355|GO:0046983|GO:0055072 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi05g01719 | Lsi-Chr5:24648201 | Lsi10g00160 | Lsi-Chr10:2566969 | 5.27E-46 | dispersed | |
| Lsi05g01719 | Lsi-Chr5:24648201 | Lsi05g00630 | Lsi-Chr5:7771313 | 9.62E-44 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi05g01719 | - | - | csv:101210812 | 380.948 |