Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01721 ATGGATTTCTTCACCAAAATCAAAACTTCCCAAAATATTCCTCCATTTCCACCCCCAAATCTCCCAAATCCATCCCATTCCAGCTTCCCTATTCTCGCCATTGCCATTATTGGAATTCTCGCCACTGCCTTCTTGCTCCTCAGCTACTATATCTTCGTCATCAACTGTTGCCTCAACTGGCACCGCATCGATCTCCTCCGCTGCCTCTCTCCCTCCTCCACTCGGCATCTCCCCTCCCCGACGGCCTACTCTCCGGCCCTCGAGACCCGGGGTCTGGACGAATCGGTGATTAGATCAATCCCTTTACTGCAATACAAGAAATCAACGGCGAAAGAAAAAACCTCATCTGAATGCGCTGTTTGTTTGAGTGAATTTGAAGAGGATGAGACGATTCGAATTATTCCCATTTGTTCACATCTATTCCACATCGATTGCATCGACATTTGGCTGCAAAATAATTCCAATTGCCCACTCTGTAGAACCAGCATTTCCAGCTCTGTTTTATCTCATCGATTTCCTCTGCCAAGCTCCTCGCCGGAGGATCCAATCGGCGGCGGAGGTGAAAGGGATTTCGTAGTGATTGAATTGGGTGGAATTAGAAACGACCCATCTGGCCAATTTTCACAAGAGCGGGCGAATTCAGGTGAATTGCCGGCGGGGAAATTGGAACAGGGGAAAAAACGGCGGAAGCTGCAGAAAGTGACGAGTTTAGGAGATGAGTGGATTGACACTAGAGAGAAAGATGAGCAATTTTGCATTCAACCCATTAGACGCTCGGTTTCGATGGACTCGTCGGCGGAACGGCAGATGTATCTGGCAGTGCAGGCGGCGCTGCAGCAGAGCCGCCGTGAGAACGCGGTTAGTCCCGGCGGCGATGGGTGTAATGGGAGAGGAAGGAGGTCTTTGTTTTCTTTTGGAAATGGGAGAAGTTGTAGAAACTCTGTTCAAGTTCAACCAGTTCGTTTGGAAGAGAATTAA 978 48.98 MDFFTKIKTSQNIPPFPPPNLPNPSHSSFPILAIAIIGILATAFLLLSYYIFVINCCLNWHRIDLLRCLSPSSTRHLPSPTAYSPALETRGLDESVIRSIPLLQYKKSTAKEKTSSECAVCLSEFEEDETIRIIPICSHLFHIDCIDIWLQNNSNCPLCRTSISSSVLSHRFPLPSSSPEDPIGGGGERDFVVIELGGIRNDPSGQFSQERANSGELPAGKLEQGKKRRKLQKVTSLGDEWIDTREKDEQFCIQPIRRSVSMDSSAERQMYLAVQAALQQSRRENAVSPGGDGCNGRGRRSLFSFGNGRSCRNSVQVQPVRLEEN 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24660912 24661889 - Lsi05G017210.1 Lsi05g01721 664213

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01721 325 MobiDBLite consensus disorder prediction 202 225 - -
Lsi05g01721 325 MobiDBLite consensus disorder prediction 306 325 - -
Lsi05g01721 325 PANTHER RING-H2 FINGER PROTEIN ATL16 17 323 - -
Lsi05g01721 325 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Lsi05g01721 325 PANTHER RING-H2 FINGER PROTEIN ATL16 17 323 IPR044600 GO:0016567|GO:0016740
Lsi05g01721 325 Pfam Ring finger domain 117 160 IPR001841 -
Lsi05g01721 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 166 IPR013083 -
Lsi05g01721 325 SUPERFAMILY RING/U-box 105 166 - -
Lsi05g01721 325 MobiDBLite consensus disorder prediction 282 325 - -
Lsi05g01721 325 SMART ring_2 118 159 IPR001841 -
Lsi05g01721 325 CDD RING-H2_PA-TM-RING 117 160 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01721 - - - bhj:120069649 586.26
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi05g01721 Lsi09g01242 CCT
Lsi05g01721 Lsi09g01242 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01721 Lsi-Chr5:24660912 Lsi09g01100 Lsi-Chr9:17598438 3.37E-28 dispersed
Lsi06g01060 Lsi-Chr6:20809341 Lsi05g01721 Lsi-Chr5:24660912 3.83E-12 transposed
Lsi09g00163 Lsi-Chr9:1707890 Lsi05g01721 Lsi-Chr5:24660912 3.16E-16 transposed
Lsi10g00332 Lsi-Chr10:5295309 Lsi05g01721 Lsi-Chr5:24660912 4.45E-24 transposed
Lsi05g01721 Lsi-Chr5:24660912 Lsi09g01242 Lsi-Chr9:20077373 6.51E-95 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g674 Blo01g00093 . Bda03g00844 . Bpe04g00798 . Bma04g00744 Bma05g01070 . Cmo17g00166 Cma06g01332 . . . . . . . . . . . . . Cla06g00655 Cam06g0700 Cec06g0705 Cco06g0713 Clacu06g0687 Cmu06g0678 Cre06g1447 Cone14ag0146 Cone15ag0155 Cone7ag0316 Cone4ag0321 Lsi05g01721 Csa02g01073 Chy05g00333 Cme06g00503 . . . . Bpe05g00861 . . . Sed02g1401 Cmo06g01336 . Cma08g01088 Cma17g00169 Car08g00963 Car17g00148 Cpe12g00145 Cpe17g00190 Bhi12g01632 Tan06g2420 Cmetu06g0958 Lac12g2188 Hepe03g0272 . Lcy13g0365 Cla05g00454 Cam05g0495 Cec05g0504 Cco05g0503 Clacu05g0490 Cmu05g0467 Cre05g0530 Lsi09g01242 . Chy06g00482 Cme05g00554
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002450 1 1 1 2 2 2 3 2 2 2 2 2 3 2 2 2 2 4 3 2 1 2 2 2 2 2 2 3 2 1 61