Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01725 ATGGATTACTCTGGATTCTTCTCCCCGGTTTCCGATTTCTCATCCGAATCATCATTCGGATCACCGGAATCATCCTTCATGAATTTCGACCACAATTTTCTCCCTTTCAATGAAAATGACTCAGAGGAAATGCTTCTGTATGGCCTAATCTCCGAGGGGACACAGGATTCGTCCGACACCGGTATCAGAACGGTGCAAGTGAAGGAAGAGGAAGTCGATTCGGTCGGCGAAGAAAGCCCAAAGAAGGATAGGGCTTACAGGGGAGTTCGCCGCCGGCCATGGGGCAAATTTGCGGCGGAAATTAGAGATTCCACTAGACATGGTATAAGGGTCTGGTTGGGAACTTTCGACAGTGCCGAAGCCGCCGCTCTGGCTTACGATCAAGCCGCCTTTTCTATGAGGGGTGCCGCCGCAATTCTCAATTTTCCCGTCGACAGAGTTAGGGAGTCTCTCAAAGAAATGAACTGCAGTGGCGGCGGCGGCAGCGCTGGTGATAGTATAGCTGAGGACGGCGGCTCTCCGGTGGTAGCATTGAAAAGAAAACACTCAATTAGAAGGAAAGCCATAAGCAAAAAGAGCAAAGACAGAGATGTGAGGATCCAAAATGTGGTGGTTTTGGAAGATTTAGGGGCAGAGTATTTGGAAGAACTTTTGGGCTCTTCTCAAAGTGGTAGCCCTTGTTCTTTCTAA 690 49.13 MDYSGFFSPVSDFSSESSFGSPESSFMNFDHNFLPFNENDSEEMLLYGLISEGTQDSSDTGIRTVQVKEEEVDSVGEESPKKDRAYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGAAAILNFPVDRVRESLKEMNCSGGGGSAGDSIAEDGGSPVVALKRKHSIRRKAISKKSKDRDVRIQNVVVLEDLGAEYLEELLGSSQSGSPCSF 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24698937 24699626 + Lsi05G017250.1 Lsi05g01725 664217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01725 229 MobiDBLite consensus disorder prediction 8 23 - -
Lsi05g01725 229 SUPERFAMILY DNA-binding domain 85 144 IPR016177 GO:0003677
Lsi05g01725 229 Pfam AP2 domain 86 135 IPR001471 GO:0003700|GO:0006355
Lsi05g01725 229 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700|GO:0006355
Lsi05g01725 229 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700|GO:0006355
Lsi05g01725 229 Gene3D AP2/ERF domain 85 145 IPR036955 GO:0003700|GO:0006355
Lsi05g01725 229 CDD AP2 86 145 IPR001471 GO:0003700|GO:0006355
Lsi05g01725 229 ProSiteProfiles AP2/ERF domain profile. 85 143 IPR001471 GO:0003700|GO:0006355
Lsi05g01725 229 PANTHER DNA-BINDING DOMAIN 28 220 IPR044808 GO:0003700|GO:0009873
Lsi05g01725 229 SMART rav1_2 85 149 IPR001471 GO:0003700|GO:0006355
Lsi05g01725 229 MobiDBLite consensus disorder prediction 1 23 - -
Lsi05g01725 229 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 28 220 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01725 Lsi-Chr5:24698937 Lsi07g01273 Lsi-Chr7:18538813 3.41E-31 dispersed
Lsi05g01011 Lsi-Chr5:17588315 Lsi05g01725 Lsi-Chr5:24698937 4.44E-58 wgd
Lsi05g01725 Lsi-Chr5:24698937 Lsi09g01239 Lsi-Chr9:20024331 1.89E-79 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25407 PF00847 AP2 2.70E-14 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01725 K14516 - csv:101210326 335.495