Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01726 ATGGAATCTGCTACCCTTAATAGAATAATTAATAGGTTGCTTGAAATCGGGACTAGATCGGGGAAGCAGGTGCTGCTTTCTGAGGCTGAAATTTCCCAGCTATGCATGGCCTCCAGAGAAATTTTCTTAAGGCAACCAAATCTTTTGGAAATTGATGCACCAATCTATATCTGCGGGGATATCCATGGTCAGTATTCTGATCTTCTAAGGCTTCTTGAATTTGGTGGATTTCCCCCTCAATCGAACTATTTGTTCTTGGGGGACTATGTAGATCGAGGGAAGCAGAGTGTAGAAACAATCTGCCTTCTCCTTGCATATAAAATAAAATATCCTGAAAACTTCTTCCTTTTGAGGGGCAACCATGAATGTGCATCTGTAAACCGTATCTACGGTTTTTATGACGAATGTAAACGTAGGTTCAATGTCAAAGTGTGGAAAATATTCACCGACTGTTTCAACTGTTTACCTGTGGCTGCTATAGTTGATGAAAAGATACTGTGTATGCATGGTGGGCTGTCTCCTCACCTTGACAGGTTAGACCAGATTAGGAATTTAAAGCGCCCTGCCGATGTTCCAGAATCAGGTTTACTCTGTGATCTTCTTTGGTCCGATCCAAGTGTAAGTACACGTGGCTGGGGACCGAATGAACGAGGGGTTTCATTCACCTTTGGTGCAGATCGAGTCATGGAGTTTCTTCAAAAACATGATCTTGATTTGATTTGTAGAGCTCACCAGGTCGTGGAGGATGGGTACGAGTTTTTTGCAAATAGACAGCTTGTAACTCTGTTTTCTGCTCCAAACTACTGTGGAGAGTTTGACAATGCTGCTGCAATGATGCATGTGGATTCAAATTTAATGTGCTCTTTCCAAATACTAAAACCACCTGAAAAAAAGCCAAGATTTGGGTTTGGCAAGGTTACCTCCTCGGATGAGTTTAGATCTCCTGTGGTTTCAGAAGGCTGTCTGAGCTTCTTCTTACTGAAATGTGACATCTGA 996 42.17 MESATLNRIINRLLEIGTRSGKQVLLSEAEISQLCMASREIFLRQPNLLEIDAPIYICGDIHGQYSDLLRLLEFGGFPPQSNYLFLGDYVDRGKQSVETICLLLAYKIKYPENFFLLRGNHECASVNRIYGFYDECKRRFNVKVWKIFTDCFNCLPVAAIVDEKILCMHGGLSPHLDRLDQIRNLKRPADVPESGLLCDLLWSDPSVSTRGWGPNERGVSFTFGADRVMEFLQKHDLDLICRAHQVVEDGYEFFANRQLVTLFSAPNYCGEFDNAAAMMHVDSNLMCSFQILKPPEKKPRFGFGKVTSSDEFRSPVVSEGCLSFFLLKCDI 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24706467 24709493 + Lsi05G017260.1 Lsi05g01726 664218

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01726 331 CDD MPP_PP1_PPKL 6 294 - -
Lsi05g01726 331 SMART pp2a_7 26 296 IPR006186 GO:0016787
Lsi05g01726 331 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 1 311 - -
Lsi05g01726 331 PRINTS Serine/threonine phosphatase family signature 54 81 IPR006186 GO:0016787
Lsi05g01726 331 PRINTS Serine/threonine phosphatase family signature 236 256 IPR006186 GO:0016787
Lsi05g01726 331 PRINTS Serine/threonine phosphatase family signature 258 274 IPR006186 GO:0016787
Lsi05g01726 331 PRINTS Serine/threonine phosphatase family signature 83 110 IPR006186 GO:0016787
Lsi05g01726 331 PRINTS Serine/threonine phosphatase family signature 179 206 IPR006186 GO:0016787
Lsi05g01726 331 PRINTS Serine/threonine phosphatase family signature 116 140 IPR006186 GO:0016787
Lsi05g01726 331 PRINTS Serine/threonine phosphatase family signature 150 176 IPR006186 GO:0016787
Lsi05g01726 331 Pfam Calcineurin-like phosphoesterase 54 246 IPR004843 GO:0016787
Lsi05g01726 331 ProSitePatterns Serine/threonine specific protein phosphatases signature. 117 122 IPR006186 GO:0016787
Lsi05g01726 331 Gene3D - 1 305 IPR029052 -
Lsi05g01726 331 Pfam Serine-threonine protein phosphatase N-terminal domain 6 51 IPR031675 -
Lsi05g01726 331 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 1 311 - -
Lsi05g01726 331 SUPERFAMILY Metallo-dependent phosphatases 21 298 IPR029052 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01726 K06269 PPP1C; serine/threonine-protein phosphatase PP1 catalytic subunit [EC:3.1.3.16] - csv:101209828 612.838
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00347 Lsi-Chr3:4129913 Lsi05g01726 Lsi-Chr5:24706467 1.02E-14 dispersed
Lsi03g02293 Lsi-Chr3:33783314 Lsi05g01726 Lsi-Chr5:24706467 3.84E-170 dispersed
Lsi05g01726 Lsi-Chr5:24706467 Lsi06g00799 Lsi-Chr6:16682323 8.50E-175 dispersed
Lsi10g01134 Lsi-Chr10:15604479 Lsi05g01726 Lsi-Chr5:24706467 3.12E-79 dispersed
Lsi10g01550 Lsi-Chr10:19925439 Lsi05g01726 Lsi-Chr5:24706467 1.25E-67 dispersed
Lsi11g01649 Lsi-Chr11:24801333 Lsi05g01726 Lsi-Chr5:24706467 6.19E-70 dispersed
Lsi05g01726 Lsi-Chr5:24706467 Lsi04g00914 Lsi-Chr4:9207219 1.07E-178 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g698 . . . . Bpe04g01007 Bpe14g01248 . . . . Cma06g01329 . Car06g01141 . . Cpe08g00331 . . . . . . . . . . . . . . . . Cone15ag0158 Cone7ag0320 Cone4ag0325 Lsi05g01726 . . Cme06g00499 Blo02g00737 Blo07g00257 Bda11g00627 Bda13g00068 . Bpe13g00561 . . . Cmo06g01333 . . . . . . . . . . . . . . Cla05g00450 Cam05g0491 Cec05g0500 Cco05g0499 Clacu05g0486 Cmu05g0463 Cre05g0526 . Csa03g01216 Chy06g00478 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000122 12 6 9 10 10 5 9 5 6 6 6 6 9 6 6 8 6 16 7 6 6 6 6 6 6 6 5 12 7 7 221