Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01727 ATGTCTCAAGAATTGGGAGTTCTAAATGCACTTGATGTTGCAAAGACCCAATGGTACCATTTTACAGCCATCATCATAGCCGGAATGGGTTTCTTCACCGATGCATACGACCTATTCTGCATCGCGGTTGTGTCAAAGTTGCTCGGTCGAATATACTACTACACCCCGGGGTCTAACCGGCCAGGGTCACTTCCTCCGAACGTGTCGGCAGCAGTGAGTGGCGTGGCGCTTTGCGGAACATTGATGGGGCAGCTGTTCTTCGGGTGGCTGGGTGACAAGATGGGAAGGAAGAAAGTGTATGGGATAACGTTGATTCTGATGGTGATATGTTCATTTGGGTCAGGGCTAAGTTTTGGGCATTCGGCTAAAGCAACACTGACCACATTATGTCTATTTCGGTTCTGGCTTGGGTTTGGGATTGGTGGTGATTACCCACTTTCTGCCACTATTATGTCTGAATATGCAAATAAGAAAACTCGTGGGGCTTTTATAGCTGCTGTTTTTGCCATGCAAGGATTCGGAATTTTGGCTGGTGGGATCATCGCTTTGATTGTTTCAGTTGCATTCAAGAATAGATTCCCAGCTCCCTCATATGAGATTGACGCAGTGGGATCAACTGTACCGGAGGCGGACTACGTATGGCGCATAGTTCTAATGTTCGGCGCCATACCTGCAGGAATGACATACTATTGGCGTATGAAGATGCCAGAAACAGCCCGTTACACAGCTCTAGTGGCGAAGAATGCAAAACAAGCCGCAGCGGACATGTCAAAAGTGTTGCAAGTAGAGGTGGAGGCAGAGGAAGAGAAGTTAGAGAAAATAGTAAGCACAACAAAAAACAACTTCGGCTTGTTTTCCAAACAGTTCCTCAAACGTCATGGCCTCCACTTGCTTGGAACCACAAGCACTTGGTTCTTACTCGACATTGCATTTTACAGCCAAAATCTCTTCCAAAAAGACATCTACACTGCAATTGGTTGGCTCCCTCCTGCAAAAACAATGAATGCTCTTGAGGAGTGCTTCCGTATCGCCAAGGCTCAAACGCTCATAGCGCTTTGTGGGACCGTGCCTGGCTATTGGTTCACTGTGGCTTTGATTGATATTATTGGTAGATTCACTATCCAATTAATTGGGTTCATTATGATGACTATTTTCATGTTTGCCATTGCCATCCCTTACAACCATTGGATTTTGAAAGAGAATCGAATTGGGTTTGTGGTCATGTATTCCTTGACCTTCTTCTTCGCCAATTTTGGGCCTAATTCCACTACTTTCATTGTGCCTGCTGAAATTTTCCCTGCAAGACTTAGGTCCACGTGTCATGGCATCTCTGCCGCCTCTGGCAAGGCCGGAGCAATCATCGGTGCTTTTGGGTTCTTGTATGCAGCGCAAAGTCCTGACCGGACAAAAACTGACCCAGGTTACCCACCGGGTATTGGTGTTAAGAACTCTCTCATTGCACTTGGTTGCATCAACTTCCTTGGTGGTTTACTTACCTTGTTGGTGCCGGAACCTAAAGGAAAATCACTCGAGGAGTTGACCGGTGAGAACGAGGTGTCGGAGGAAAATGTCAAGAGTGTGTTGCAGGGCATAGACTCACTTTTTAAGGGGTGTTTGAAGGCTCTCTTTCGATTACTCTCTTCGAACTGTCAATTTCTAAATATTAAATCAAACCCTAACCGAGGTTAA 1689 46.06 MSQELGVLNALDVAKTQWYHFTAIIIAGMGFFTDAYDLFCIAVVSKLLGRIYYYTPGSNRPGSLPPNVSAAVSGVALCGTLMGQLFFGWLGDKMGRKKVYGITLILMVICSFGSGLSFGHSAKATLTTLCLFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILAGGIIALIVSVAFKNRFPAPSYEIDAVGSTVPEADYVWRIVLMFGAIPAGMTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVEVEAEEEKLEKIVSTTKNNFGLFSKQFLKRHGLHLLGTTSTWFLLDIAFYSQNLFQKDIYTAIGWLPPAKTMNALEECFRIAKAQTLIALCGTVPGYWFTVALIDIIGRFTIQLIGFIMMTIFMFAIAIPYNHWILKENRIGFVVMYSLTFFFANFGPNSTTFIVPAEIFPARLRSTCHGISAASGKAGAIIGAFGFLYAAQSPDRTKTDPGYPPGIGVKNSLIALGCINFLGGLLTLLVPEPKGKSLEELTGENEVSEENVKSVLQGIDSLFKGCLKALFRLLSSNCQFLNIKSNPNRG 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24715306 24718738 + Lsi05G017270.1 Lsi05g01727 664219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01727 562 CDD MFS_PhT 24 506 - -
Lsi05g01727 562 SUPERFAMILY MFS general substrate transporter 11 513 IPR036259 -
Lsi05g01727 562 ProSiteProfiles Major facilitator superfamily (MFS) profile. 23 507 IPR020846 GO:0022857
Lsi05g01727 562 PANTHER INORGANIC PHOSPHATE TRANSPORTER 1-4-LIKE 1 531 - -
Lsi05g01727 562 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 1 531 - -
Lsi05g01727 562 Pfam Sugar (and other) transporter 25 513 IPR005828 GO:0016021|GO:0022857|GO:0055085
Lsi05g01727 562 Gene3D MFS general substrate transporter like domains 19 266 IPR036259 -
Lsi05g01727 562 Gene3D MFS general substrate transporter like domains 269 530 IPR036259 -
Lsi05g01727 562 TIGRFAM 2A0109: phosphate:H+ symporter 10 516 IPR004738 GO:0005315|GO:0006817|GO:0016021
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi05g01727 Lsi09g01236 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01727 Lsi-Chr5:24715306 Lsi08g00415 Lsi-Chr8:11593853 0 dispersed
Lsi05g01727 Lsi-Chr5:24715306 Lsi05g01728 Lsi-Chr5:24728682 0 tandem
Lsi04g02418 Lsi-Chr4:31310179 Lsi05g01727 Lsi-Chr5:24715306 4.06E-165 transposed
Lsi05g01034 Lsi-Chr5:17891068 Lsi05g01727 Lsi-Chr5:24715306 0 transposed
Lsi05g01012 Lsi-Chr5:17605290 Lsi05g01727 Lsi-Chr5:24715306 5.28E-120 wgd
Lsi05g01727 Lsi-Chr5:24715306 Lsi09g01236 Lsi-Chr9:19877147 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01727 K08176 - csv:101213007 944.11