Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01728 ATGCACGTGAGATGGAGGGTGTTGCCGCTTCTTAAATGCCTCATCATCTCCTCCTCATTTCTCTCCATCGCCGCTCCTTCTTCTAACTCCTCCTCCTCCGCCTCCATTTTCCGGTGCAACCACAAAATAGTGGAGATCGATCGCAGTGATTCAGTGCTTCCTCCGATTCGATCGACGGTTCTAGGAGAACAACTACAAGTGTTGAACGCACTTGATGTAGCCAAAACTCAATGGTACCATTTCACAGCCATTGTGATAGCTGGAATGGGCTTTTTCACAGACGCCTATGATCTCTTCTGTGTATCTCTTGTTACCAAACTATTGGGTCGAATTTACTATCACAAAGAAGGCTCAGAAAAACCTGGTGAATTGCCTTCAAACATAGCTGCTGCCATAAACGGCGTCGCTTTCTGTGGAACCCTTTCCGGCCAGCTCTTCTTTGGGTGGCTTGGTGACAAGATGGGTCGCAAAAGAGTCTACGGAATGACCCTTATGCTTATGGTCATTTGTTCTGTAGCTTCTGGACTATCTTTCAGCAGCACCCCAACATCTGTGGTGGCCACTCTCTGTTTTTTTCGATTCTGGCTTGGATTTGGCATCGGCGGCGATTACCCGCTTTCCGCCACCATCATGTCGGAATATGCCAATAAAAGGACACGAGGGGCATTCATTGCCGCTGTCTTTGCAATGCAGGGGTTTGGGATTTTGGCCGGTGGGGTGGTGGCAATTATTGTCTCCTCTGCATTTGACGCCAAATTTCCATCTCCATCGTATCAGGAAAATCCCACTGCCTCAACTGTCCCACAGGCTGATTATGTATGGCGAATTATTGTGATTTTTGGTGCTTTTCCGGCTCTGCTCACTTATTACTGGCGAATGAAAATGCCTGAAACTGCTCGTTACACCGCCTTGGTTGCTAAAAATGCCAAACAAGCAGCTGCTGATATGTCTAAAGTTTTGCAGGTTGAATTAGAATCGGAGCAGGAAAAAATTAACGAGGGCAAATCGAAGAATGATTTTGGGTTGTTCTCAATGAGTTTTCTTCGTCGACATGGACTTCACTTGTTGGGGACTACTACTACTTGGTTCTTGTTAGACATTGCATTTTATAGTCAGAATCTCTTTCAGAAGGACATTTTCACTGCCATTGGTTGGCTTCCTCCAGCAAAGACGATGAACGCCATTGAAGAAGTTTTCAGAATTGCCAAAGCTCAAACCCTCATTGCATTGTGCAGTACAGTACCTGGTTATTGGTTCACTGTGGCGCTCATTGACGTAATGGGACGATTTGCAATTCAATTGATGGGGTTTTTCTTCATGACGGTATTCATGTTTGCATTGGCCATTCCGTACAAGCATTGGACTTTGGAAGCCAATAGAATTGGGTTTGTTGTGATGTATTCTCTAACGTTCTTCTTCGCGAATTTTGGGCCAAATGCCACCACTTTTGTGGTTCCAGCAGAGATATTTCCAGCCAGACTTCGATCAACCTGCCACGGAATATCGGCTGCTTCTGGAAAAGCAGGGGCAATTGTTGGGGCATTTGGATTTCAGTATGCAGAAAAGGGGCTTGGAGTGAAAAAAACATTGATAATTCTTGGTGTTGTGAATGCTCTTGGTATGTTGTTCACTTTCTTGGTTCCTGAATCGAAGGGGAAGTCTTTGGAAGAAATGTCCGGTGAAACTGGAGATGAGGTAGAGAGCAAAACAGAGTCGAGGACTCAATCTGATCATAGAACTACACCTGTTTGA 1752 45.32 MHVRWRVLPLLKCLIISSSFLSIAAPSSNSSSSASIFRCNHKIVEIDRSDSVLPPIRSTVLGEQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCVSLVTKLLGRIYYHKEGSEKPGELPSNIAAAINGVAFCGTLSGQLFFGWLGDKMGRKRVYGMTLMLMVICSVASGLSFSSTPTSVVATLCFFRFWLGFGIGGDYPLSATIMSEYANKRTRGAFIAAVFAMQGFGILAGGVVAIIVSSAFDAKFPSPSYQENPTASTVPQADYVWRIIVIFGAFPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVELESEQEKINEGKSKNDFGLFSMSFLRRHGLHLLGTTTTWFLLDIAFYSQNLFQKDIFTAIGWLPPAKTMNAIEEVFRIAKAQTLIALCSTVPGYWFTVALIDVMGRFAIQLMGFFFMTVFMFALAIPYKHWTLEANRIGFVVMYSLTFFFANFGPNATTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFQYAEKGLGVKKTLIILGVVNALGMLFTFLVPESKGKSLEEMSGETGDEVESKTESRTQSDHRTTPV 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24728682 24733115 + Lsi05G017280.1 Lsi05g01728 664220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01728 583 Pfam Sugar (and other) transporter 84 559 IPR005828 GO:0016021|GO:0022857|GO:0055085
Lsi05g01728 583 MobiDBLite consensus disorder prediction 555 583 - -
Lsi05g01728 583 TIGRFAM 2A0109: phosphate:H+ symporter 70 561 IPR004738 GO:0005315|GO:0006817|GO:0016021
Lsi05g01728 583 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 63 573 - -
Lsi05g01728 583 PANTHER INORGANIC PHOSPHATE TRANSPORTER 1-4-LIKE 63 573 - -
Lsi05g01728 583 SUPERFAMILY MFS general substrate transporter 69 559 IPR036259 -
Lsi05g01728 583 Gene3D MFS general substrate transporter like domains 79 576 IPR036259 -
Lsi05g01728 583 ProSiteProfiles Major facilitator superfamily (MFS) profile. 83 552 IPR020846 GO:0022857
Lsi05g01728 583 CDD MFS_PhT 84 551 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02418 Lsi-Chr4:31310179 Lsi05g01728 Lsi-Chr5:24728682 1.98E-164 dispersed
Lsi05g00071 Lsi-Chr5:1448558 Lsi05g01728 Lsi-Chr5:24728682 0 dispersed
Lsi05g01034 Lsi-Chr5:17891068 Lsi05g01728 Lsi-Chr5:24728682 0 dispersed
Lsi05g01728 Lsi-Chr5:24728682 Lsi09g01236 Lsi-Chr9:19877147 0 dispersed
Lsi05g01727 Lsi-Chr5:24715306 Lsi05g01728 Lsi-Chr5:24728682 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01728 K08176 - csv:101209582 945.651