Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01735 ATGGGGCAACAACAATCGAAAGATGAACTGCTGTATCAGCAAGTTAGCTATGGCAACACAGAAGGGATTAAAGCCCTTTGCCGAGAGGGTGCAGGCCTTGAGTGGATTGATAAGGAGGCGAAAACCCCTTTGATTGTGGCCTGCATGAGTCCCGAGCTTCACAATGTCGCGAAAACTTTGATAGAACTTGGTGCTAATGTTAATGCTTATCGGCCTGGACGTCATGCTGGCACTCCATTACATCATGCAGCTAAAAGAGGTCTTGAAAATAATGTCAAGTTACTTCTTTCTCATGGAGCAAATCCTTTGATCATGAATGATGATTGTCAGAGTCCTCTTGATGTTGCTAGAGCAAAAGGTCACAGCAATGTTGTTCGTACAATAGAGAGTCATATTTGTTTGTTCTCGGGTTGGTTGCGGGAATTCTATGGACCAGGATTTTTGGAACTACTGGCTCCTCAACTAGTATCGAGGAAAGTTTGGGCTGTTATTTTACCATGTGGAGCGCGAAACCTTACAAAGCCTTTCAAGTTGGAGCTTGCAATCTACACAACTCTACAGGATGCTCAACCACGCACTGTTGTTCCACTGTGGAGAGCTGATTTGGAGCAGTCAAAGTTACAGCATTCTGATCCATCAGTTATGATTGTGGATAACGCTGCAAAAACTCGCTTGAAACTTGCATCTGGGACTGAAAATGACAAGGAACAACTTCAGTGGTTTTGCAATGCATGCAAAGGAATTCCTTCGATGATGCACCCAACATTTATGAATGGTAACCATGGTTCGGGTGCTTCGGCAACTGCACCACCAGACTCAGAAGATGTGGAGCTAGCCATGGCCATTAATGCCTCCATCCAGTCAGCTATCCATGGGAGACCACCCTTTCCTGATCCCAATCCAAGTTCTGAAGCAAGTACCTCAAGTAGCCATACAGGTCCAGTTGCACCAACAACACATTCTACAAAATTAGGCACTAATGTATCAGAAGTGCATGAAGCTGGCCAGAGCAGCACTTCAAACGAACATCCTCAAATCCAGACTAACACCATCACTCCAGATGCAGTACCTTCAGCTCCATTGGCAGTTGATGAGATTCTGGACGATGGTGCAATTCACTATCCTTCAATCGATTCAAGTCCCATTGACTTGTCATCTCAAACTGCTCAGAACGTTCCCTTACGAGCTGGTGAAGGAAGAGAGGAACCAAGTTCTTCGTCATGTGTTATATGTTTGGATGCTCCTATACAAGGAGCCTGCATTCCCTGTGGACATATGGCTGGGTGTATGAATTGCTTGACCGAAATCAAATCTAAGAAATGGGGATGCCCAGTTTGTCGCGCCAAAATTGACCAGGTTGTCAGATTGTATGCTGTATGA 1380 45.07 MGQQQSKDELLYQQVSYGNTEGIKALCREGAGLEWIDKEAKTPLIVACMSPELHNVAKTLIELGANVNAYRPGRHAGTPLHHAAKRGLENNVKLLLSHGANPLIMNDDCQSPLDVARAKGHSNVVRTIESHICLFSGWLREFYGPGFLELLAPQLVSRKVWAVILPCGARNLTKPFKLELAIYTTLQDAQPRTVVPLWRADLEQSKLQHSDPSVMIVDNAAKTRLKLASGTENDKEQLQWFCNACKGIPSMMHPTFMNGNHGSGASATAPPDSEDVELAMAINASIQSAIHGRPPFPDPNPSSEASTSSSHTGPVAPTTHSTKLGTNVSEVHEAGQSSTSNEHPQIQTNTITPDAVPSAPLAVDEILDDGAIHYPSIDSSPIDLSSQTAQNVPLRAGEGREEPSSSSCVICLDAPIQGACIPCGHMAGCMNCLTEIKSKKWGCPVCRAKIDQVVRLYAV 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24782512 24787905 + Lsi05G017350.1 Lsi05g01735 664227

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01735 459 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Lsi05g01735 459 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Lsi05g01735 459 ProSiteProfiles Zinc finger RING-type profile. 408 447 IPR001841 -
Lsi05g01735 459 Pfam Ankyrin repeats (many copies) 78 126 IPR002110 GO:0005515
Lsi05g01735 459 PANTHER ROLLING PEBBLES, ISOFORM B 1 459 - -
Lsi05g01735 459 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT35, PUTATIVE-RELATED 1 459 - -
Lsi05g01735 459 MobiDBLite consensus disorder prediction 302 355 - -
Lsi05g01735 459 Pfam Zinc finger, C3HC4 type (RING finger) 406 453 - -
Lsi05g01735 459 SUPERFAMILY RING/U-box 390 453 - -
Lsi05g01735 459 Gene3D - 2 135 IPR036770 -
Lsi05g01735 459 SUPERFAMILY Ankyrin repeat 9 133 IPR036770 -
Lsi05g01735 459 SMART ANK_2a 108 137 IPR002110 GO:0005515
Lsi05g01735 459 SMART ANK_2a 75 104 IPR002110 GO:0005515
Lsi05g01735 459 SMART ANK_2a 39 69 IPR002110 GO:0005515
Lsi05g01735 459 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Lsi05g01735 459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 394 459 IPR013083 -
Lsi05g01735 459 MobiDBLite consensus disorder prediction 289 357 - -
Lsi05g01735 459 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Lsi05g01735 459 SMART ring_2 408 446 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01735 - - - csv:101208364 843.188
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi05g01735 Lsi09g01232 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01456 Lsi-Chr5:22427884 Lsi05g01735 Lsi-Chr5:24782512 1.13E-06 dispersed
Lsi05g01735 Lsi-Chr5:24782512 Lsi07g00388 Lsi-Chr7:4139003 4.37E-07 dispersed
Lsi01g00007 Lsi-Chr1:119370 Lsi05g01735 Lsi-Chr5:24782512 1.19E-07 transposed
Lsi02g02901 Lsi-Chr2:35237266 Lsi05g01735 Lsi-Chr5:24782512 4.67E-06 transposed
Lsi05g01735 Lsi-Chr5:24782512 Lsi09g01232 Lsi-Chr9:19773050 2.21E-17 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g717 . . . . . Bpe14g01258 . . . Cmo17g00160 Cma06g01318 Cma14g01815 Car06g01136 . . . . . . . . . . . Cla06g00667 Cam06g0716 . Cco06g0731 Clacu06g0707 Cmu06g0694 Cre06g1464 . . . . Lsi05g01735 Csa02g01059 Chy05g00319 Cme06g00486 . Blo07g00266 Bda11g00635 Bda13g00059 . . Bma02g00778 . . Cmo06g01328 Cmo14g01854 . Cma17g00162 . Car17g00143 . . Bhi12g01615 . . . . . Lcy13g0378 Cla05g00442 Cam05g0480 Cec05g0490 Cco05g0490 Clacu05g0476 Cmu05g0455 Cre05g0517 Lsi09g01232 Csa03g01204 Chy06g00467 Cme05g00571
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002162 2 4 2 1 1 2 3 2 2 2 2 2 3 2 2 3 2 2 1 2 2 2 2 2 2 2 2 3 2 2 63