Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01738 ATGGAATTTGCGATCATTACCATCATCGGCCTGGAAGGTACAAATGTACAAACTGGAGAGGAAGTGGCTGTGAAGCTGGAATCTGCAAAGACCAAGCACCCTCAGCTTCACTATGAGTCAAAACTATACATGCTTCTTCAAGGAGGAACCGGTATCCCCCATCTCAAATGGTTTGGAGTTGAGGGCGATTACAATGTCATGGTTATTGATCTCCTTGGGCCAAGCCTAGAAGACTTGTTCAACTACTGCAATCGGAAACTGTCTTTGAAGTCGGTTTTGATGCTTGCAGATCAGTTGATAAACAGAGTTGAATATATGCATTCACGGGGTTTCCTTCATCGTGACATAAAGCCGGACAATTTTTTAATGGGCTTGGGGCGAAAGGCTAATCAGGTGTACATCATTGACTATGGTCTTGCAAAGAAGTATAGAGATCTTCAGACACATAAGCATATACCATACAGAGAAAATAAGAATCTCACGGGAACAGCTCGCTATGCAAGTGTCAATACTCATCTTGGAGTTGAGCAAAGCAGGAGGGACGATTTAGAATCACTGGGCTACGTGCTAATGTATTTTCTTAGGGGAAGCCTTCCCTGGCAAGGACTAAAGGCAGGGACTAAAAAGCAAAAATATGATAAGATCAGTGAAAAAAAGATGCTTACTCCAGTAGAGGTCCTCTGCAAGTCATATCCATCAGAATTTACGTCCTACTTTCACTATTGTCGGTCACTGAGGTTTGAAGATAAACCTGACTATTCATATCTGAAGAGATTATTCCGAGACCTTTTCATCCGTGAAGGATATCAATTTGACTATGTATTTGACTGGACTATACTCAAATATCCACAGATTGGCTCCAGTTCAAAACCACGACCCAGTGGAAAACCAGGTCACACCCCAGGACCATCCGCTGAAAGAGGGGAAAAGCATCCAGTGGGCCAAGATGTCCGAGATAGATTCGCTGGTGGAGCTGAGCCATTCGGAAGAAGGAACGCCAGTGGGCATTTGCATGGTGATCATTCCAGACACAGATCTGATGATGTACCATCTTCCAAGGATGTGCAACCTGATTCAGAAAGGGGCCGCAGTAGTTATAGGAATGGAAGCATTTCGAAGAGGCCTGTTCTATCAAGCAGTCGACCAAGCTCCTCTGGGGAGCCAAGTGAAATCCGATCAAGTCGTCTGGTGTCAGCAAGTAGTCGTCTATCTGGAGGCCAAAGGGTTCAGCCTGGTTTTGAGTCCAAAACGACAACTTTTACCCGTTCTTCAACTACAAAAGGCGGTCGTGATGATACCCTCCGAAGCTTTGAGCTGTTGTCTATTGGAACTGGCAAGAGGAAATGA 1347 44.84 MEFAIITIIGLEGTNVQTGEEVAVKLESAKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKLSLKSVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPVEVLCKSYPSEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSKPRPSGKPGHTPGPSAERGEKHPVGQDVRDRFAGGAEPFGRRNASGHLHGDHSRHRSDDVPSSKDVQPDSERGRSSYRNGSISKRPVLSSSRPSSSGEPSEIRSSRLVSASSRLSGGQRVQPGFESKTTTFTRSSTTKGGRDDTLRSFELLSIGTGKRK 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24810238 24816658 + Lsi05G017380.1 Lsi05g01738 664230

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01738 448 MobiDBLite consensus disorder prediction 333 361 - -
Lsi05g01738 448 ProSiteProfiles Protein kinase domain profile. 1 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01738 448 Gene3D Transferase(Phosphotransferase) domain 1 8 310 - -
Lsi05g01738 448 MobiDBLite consensus disorder prediction 303 317 - -
Lsi05g01738 448 PANTHER CASEIN KINASE I-LIKE PROTEIN 13 435 - -
Lsi05g01738 448 MobiDBLite consensus disorder prediction 286 432 - -
Lsi05g01738 448 PANTHER CASEIN KINASE-RELATED 13 435 - -
Lsi05g01738 448 Pfam Protein kinase domain 13 215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01738 448 SUPERFAMILY Protein kinase-like (PK-like) 12 277 IPR011009 -
Lsi05g01738 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 111 123 IPR008271 GO:0004672|GO:0006468
Lsi05g01738 448 MobiDBLite consensus disorder prediction 362 427 - -
Lsi05g01738 448 CDD STKc_CK1_delta_epsilon 13 269 - -
Lsi05g01738 448 SMART serkin_6 3 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01738 K08960 CSNK1E; casein kinase 1, epsilon [EC:2.7.11.1] - csv:101207063 831.247
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi05g01738 Lsi09g01228 CCT
Lsi05g01738 Lsi09g01228 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02993 Lsi-Chr2:36015839 Lsi05g01738 Lsi-Chr5:24810238 2.58E-52 transposed
Lsi07g00593 Lsi-Chr7:6300012 Lsi05g01738 Lsi-Chr5:24810238 1.11E-175 transposed
Lsi07g01101 Lsi-Chr7:16413151 Lsi05g01738 Lsi-Chr5:24810238 1.19E-10 transposed
Lsi08g01079 Lsi-Chr8:19373547 Lsi05g01738 Lsi-Chr5:24810238 4.77E-54 transposed
Lsi10g00987 Lsi-Chr10:14223580 Lsi05g01738 Lsi-Chr5:24810238 1.25E-50 transposed
Lsi11g00181 Lsi-Chr11:1880391 Lsi05g01738 Lsi-Chr5:24810238 1.15E-180 transposed
Lsi11g00246 Lsi-Chr11:2490867 Lsi05g01738 Lsi-Chr5:24810238 2.51E-142 transposed
Lsi05g01031 Lsi-Chr5:17852437 Lsi05g01738 Lsi-Chr5:24810238 5.18E-25 wgd
Lsi05g01738 Lsi-Chr5:24810238 Lsi09g01228 Lsi-Chr9:19692052 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g724 . . . . . Bpe14g01261 . . Cmo08g01053 . Cma06g01316 Cma14g01817 Car06g01133 Car14g01629 . Cpe08g00338 Cpe03g01520 Bhi01g00721 . . . . . . Cla06g00672 Cam06g0721 Cec06g0729 Cco06g0737 Clacu06g0712 Cmu06g0698 Cre06g1469 Cone14ag0152 Cone15ag0166 Cone7ag0330 Cone4ag0335 Lsi05g01738 Csa02g01054 Chy05g00315 Cme06g00483 Blo02g00750 Blo07g00269 Bda11g00636 Bda13g00058 . Bpe13g00553 Bma02g00775 Bma06g01604 . Cmo06g01326 Cmo14g01855 Cma08g01078 . Car08g00952 . . Cpe17g00199 Bhi12g01609 Tan06g2404 . . Hepe03g0291 . Lcy13g0383 Cla05g00439 . Cec05g0487 . Clacu05g0474 . . Lsi09g01228 Csa03g01201 Chy06g00465 Cme05g00576
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000454 2 6 4 3 4 3 5 3 3 3 3 2 5 3 3 4 3 8 5 3 3 3 3 3 3 3 3 15 4 2 117
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83676 PF00069 Pkinase 8.20E-20 CL0016 Lsi PK