Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01745 ATGGCCACCTCTGTAAAGGGCCTTTTAAAAGGATTAAGATACATTTCACAGATTTTCGATGAGAAAGAACCAGAAATGCAGATTGGTCTTCCCACTGATGTTAAGCATGTTGCTCATATTGGATGGGATGGTCCATCTGGGAATCAAAACAATACACCTAGTTGGATGAACGAGTTTAAATCTTCACCAAAAACCCAAAGCTCAAGCGATTTGGTTAATTCTATTGGGGAACTTGATCTTTCTTCTGCTAATATCCCCACTCAAGAGTCTGGAGAGTTAGATGTGCAAAAGGCAAGTCGAGCACCGAGGTCGAAACGCCAAACGTCGTCGGAGTCTTCGTCGCCTTTAGACTCTTCCTCTGCTCGGCGAAACTCTGAGAAGGGCTCAAGACGACAACGCGCATCATGCCCTTCAGGTGATTCTGGCCCTCAGGAAGGTAGTTCTCGAAGTTCACGACGTCGTCGTAGTTCGAATCCTGGAGCTGAATCAAGCACAGAAAATCCTATCCCAAAACACTCGAATCGGAGGAAAACTAAGGGGTCGTCGGACGGTGGTGAATCAACAAGATCATCTAGATCAAGTGACAATAACTCTTTAACAGACATACCTCTCCCAGTTTTGGAAGCAGTGGATGAAGAGAAAGGATGA 648 45.37 MATSVKGLLKGLRYISQIFDEKEPEMQIGLPTDVKHVAHIGWDGPSGNQNNTPSWMNEFKSSPKTQSSSDLVNSIGELDLSSANIPTQESGELDVQKASRAPRSKRQTSSESSSPLDSSSARRNSEKGSRRQRASCPSGDSGPQEGSSRSSRRRRSSNPGAESSTENPIPKHSNRRKTKGSSDGGESTRSSRSSDNNSLTDIPLPVLEAVDEEKG 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24845470 24847117 + Lsi05G017450.1 Lsi05g01745 664237

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01745 215 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC5-LIKE 1 213 - -
Lsi05g01745 215 MobiDBLite consensus disorder prediction 169 183 - -
Lsi05g01745 215 Gene3D CRIB domain 24 72 IPR036936 -
Lsi05g01745 215 MobiDBLite consensus disorder prediction 39 215 - -
Lsi05g01745 215 CDD CRIB 26 62 - -
Lsi05g01745 215 MobiDBLite consensus disorder prediction 102 122 - -
Lsi05g01745 215 MobiDBLite consensus disorder prediction 184 201 - -
Lsi05g01745 215 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC8 1 213 IPR044510 -
Lsi05g01745 215 SMART PBD_5 28 62 IPR000095 -
Lsi05g01745 215 MobiDBLite consensus disorder prediction 44 94 - -
Lsi05g01745 215 Pfam P21-Rho-binding domain 27 63 IPR000095 -
Lsi05g01745 215 MobiDBLite consensus disorder prediction 131 146 - -
Lsi05g01745 215 ProSiteProfiles CRIB domain profile. 28 41 IPR000095 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01745 - - - cmo:103483575 341.273
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00410 Lsi-Chr1:3480789 Lsi05g01745 Lsi-Chr5:24845470 3.88E-11 dispersed
Lsi02g00626 Lsi-Chr2:5575667 Lsi05g01745 Lsi-Chr5:24845470 2.10E-26 dispersed
Lsi06g00705 Lsi-Chr6:11302593 Lsi05g01745 Lsi-Chr5:24845470 1.94E-08 dispersed
Lsi05g01745 Lsi-Chr5:24845470 Lsi09g01790 Lsi-Chr9:26629888 4.67E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g733 . . . . . . . . . . Cma06g01313 Cma14g01822 Car06g01127 Car14g01635 . Cpe08g00342 . Bhi01g00711 . . . Hepe05g1668 . . . . . . . . . . . . . Lsi05g01745 . . . . . . . . . . . . Cmo06g01321 Cmo14g01862 . . . . . . . . . . . . . . . . . . . . . Csa03g01195 Chy06g00459 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000834 1 5 1 3 2 3 5 2 3 3 3 2 5 3 3 4 1 2 5 3 3 3 3 3 3 3 2 5 3 1 88