Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01749 ATGGTAAAGTTCTCGAAGGAGCTGGAAGCTCAACTCATTCCTGAATGGAAAGATGCGTTCGTTAATTACTGGCAACTCAAAAAACTTGTTAAGAGAATCAAACTCTCCAATATCCCTAAATCTCCACCTCCCTCCGCCGCATCCTCCCTCTTTTCTTCTCTTGCCGCTAACTTCCGCCGCCGCCGCCGCCCTCTCTCTCAGGTGAAAAAGAGTGAAAGCCTTGAAGATGGGCATCCTAATGAAGATCGCCAAACCGAACTTTCTCAATTTTTCTCCCAAGAAGATGAAGTGAAGATATTTTTTGAGACGTTGGATGAAGAATTGGATAAAGTGAATGAGTTTTATGGAAGTAGAGAGAGTGAGTTTGTGGAGAGAGGGGACAGCCTAAAGGAGCAGCTTGCAATTTTGGTTGAATTCAAACGCATTCTTGAAGATCGCCGCCGTAAATGTTCCCCGCCGGGCACCTTTTCCCGCTCCTCCTCTTTTTCTCCCCGTCACTCCAACTTTTCCGAGAACACAGAATCAAACGAAATGTCAGCAGAAGTATCGGAGACGGATGAAGCAATAGCAGCATTAGAGAGGCACGGCGTGACGTTTATTAACGCTGCTGTGAGAGGCAAGACAAAGAAAGGAAATAAACCCAAGATGGCACTGCGGGTCGATATTCCAGCCACCACTCCGTCGAGGACCATCTCCGCCGTCATGGGGATGCTGTGGGAGGACCTGATCAACAATCCCAAAAAAGACGTCTCCGGCGACTCTATTAGCCGCAAAAAAATTCAGTGGGCCGAGAAGATGATCCGAGGCGCCTTTGTTGAGTTATACAAAGGTCTCGGCCTCCTCAAAACTTTCAGTTCGCTGAACATGAAGGCATTCGTAAAGATTCTGAAAAAATTCGACAAGGTGGCGAACCAAAAAGCGTCGGCGAGCTATCTTCAAGAGGTGAAAAAGTCACCCTTTATCAGTTCCGATAAGGTGGTAAGACTAATGGACGAAGTGGAATCCATATTCACAAAGCACTTCGCCAACAATGACAGGAAAAAAGCTATGAAGTATTTGAGGCCTCAGCAGCCTAAAGATTCTCACATGACCACCTTCTTTGTTGGCTTGTTTACAGGTTGCTTTGTGTCATTGTTTATTGTATACGCAACTTTGGCTCATTTGTCTGGTGTCTTTTCTCGTCCAAATGAAGTTTCTTACATGGATGCTGTTTATCCTGTTTTCAGCATGTTTGCATTGCTTAGCTTGCACACGTTCATGTATGGCTGCAATCTCTTCACCTGGAAGCATGCAAGGATCAATTACAACTTCATTTTCGAGTTTCAGTCTAGCACCGCGATCAAGTATCGCGATGCTTTTCTTATATGCACCACCACCATGACTGCTGTGGTTGGAGCGCTCGTCATTCATTTGATTTTAGGACTCACCGGTTTCTCACCTGTCCAAGTTGATTCCATTCCCGGTCTTCTCCTTCTTATTTTTGTTGTCCTTCTTGTATGCCCGTTTGACATATTCTATCGACCAACACGCTACTATTTTCTCCGCGTGTTTCGTAACATCATTTTCTCTCCTTTTTACAAGGTTCTGTTTGTTGACTCTTTCCTGGCAGACCAACTTACAAGCCAGATCACTCTGCTGAGGCTCGTGGAATCCGCTGTCTGCTACTTCACCGCAAGTTTCTTCGGAATGCATCGAGGTGACGTCTGCAAATCCGGGACATTGTACTGGGAGTTAGCTTACCTCATTTCATTTTTGCCATACTATTGGCGTGCAATGCAGTGTGCAAGAAGATGGTTTGATGACAATGACATGGACCATTTGGCTAACATGGGCAAATATGTATCGGCCATGGTAGCAGCCGGTGCTAGGCTTACATATTCTCGGCAAGACACCCACCTCTGGTTCATAATGGTCTTGGTCACTTCCTTTGTAGCGACAGTATATCAGTTGTACTGGGATTTTGCGAAGGACTGGGGAATTCTCAATCCGAAATCTCGAAATCCATGGCTCCGCGATGAACTCATCTTGAAGAACAAAGGCATCTACTACCTGTCAATGGTTCTGAATGTGATTCTAAGAGTTGCTTGGGTGGAGACCGTGTTACAGTTGCATAAATTGCACATTAGAAACATCGAGTCGAAAATGCTAGACTTCCTGTTGGCGTCGCTCGAGGTTATTCGACGGGGGCATTGGAATTTCTACAGATTGGAGAATGAACAACTAAACAACGTTGGAAAGAACAGGGCTGTGAAGACGGTTCCTCTACCATTCCGTGACGTTGACTCTGATGGCTAA 2295 45.58 MVKFSKELEAQLIPEWKDAFVNYWQLKKLVKRIKLSNIPKSPPPSAASSLFSSLAANFRRRRRPLSQVKKSESLEDGHPNEDRQTELSQFFSQEDEVKIFFETLDEELDKVNEFYGSRESEFVERGDSLKEQLAILVEFKRILEDRRRKCSPPGTFSRSSSFSPRHSNFSENTESNEMSAEVSETDEAIAALERHGVTFINAAVRGKTKKGNKPKMALRVDIPATTPSRTISAVMGMLWEDLINNPKKDVSGDSISRKKIQWAEKMIRGAFVELYKGLGLLKTFSSLNMKAFVKILKKFDKVANQKASASYLQEVKKSPFISSDKVVRLMDEVESIFTKHFANNDRKKAMKYLRPQQPKDSHMTTFFVGLFTGCFVSLFIVYATLAHLSGVFSRPNEVSYMDAVYPVFSMFALLSLHTFMYGCNLFTWKHARINYNFIFEFQSSTAIKYRDAFLICTTTMTAVVGALVIHLILGLTGFSPVQVDSIPGLLLLIFVVLLVCPFDIFYRPTRYYFLRVFRNIIFSPFYKVLFVDSFLADQLTSQITLLRLVESAVCYFTASFFGMHRGDVCKSGTLYWELAYLISFLPYYWRAMQCARRWFDDNDMDHLANMGKYVSAMVAAGARLTYSRQDTHLWFIMVLVTSFVATVYQLYWDFAKDWGILNPKSRNPWLRDELILKNKGIYYLSMVLNVILRVAWVETVLQLHKLHIRNIESKMLDFLLASLEVIRRGHWNFYRLENEQLNNVGKNRAVKTVPLPFRDVDSDG 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24872208 24879671 - Lsi05G017490.1 Lsi05g01749 664241

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01749 764 MobiDBLite consensus disorder prediction 62 83 - -
Lsi05g01749 764 PANTHER PHOSPHATE TRANSPORTER PHO1-LIKE PROTEIN 2 763 - -
Lsi05g01749 764 Pfam SPX domain 2 315 IPR004331 -
Lsi05g01749 764 MobiDBLite consensus disorder prediction 148 185 - -
Lsi05g01749 764 CDD SPX_PHO1_like 3 308 IPR034092 -
Lsi05g01749 764 MobiDBLite consensus disorder prediction 67 83 - -
Lsi05g01749 764 ProSiteProfiles EXS domain profile. 570 764 IPR004342 GO:0016021
Lsi05g01749 764 Pfam EXS family 405 740 IPR004342 GO:0016021
Lsi05g01749 764 ProSiteProfiles SPX domain profile. 2 313 IPR004331 -
Lsi05g01749 764 PANTHER XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED 2 763 - -
Lsi05g01749 764 MobiDBLite consensus disorder prediction 153 179 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01749 K24195 XPR1, PHO1; xenotropic and polytropic retrovirus receptor 1 - csv:101206345 1409.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00305 Lsi-Chr4:3097530 Lsi05g01749 Lsi-Chr5:24872208 0 dispersed
Lsi04g00395 Lsi-Chr4:3891777 Lsi05g01749 Lsi-Chr5:24872208 1.09E-08 dispersed
Lsi05g01749 Lsi-Chr5:24872208 Lsi06g00968 Lsi-Chr6:19630371 7.92E-07 dispersed
Lsi05g01749 Lsi-Chr5:24872208 Lsi04g00392 Lsi-Chr4:3881727 7.83E-142 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g741 . . . . . Bpe14g01269 . . . . Cma06g01309 Cma14g01826 Car06g01123 Car14g01638 . Cpe08g00346 Cpe03g01529 Bhi01g00707 . . . Hepe05g1672 . . . . . . . . . Cone14ag0163 Cone15ag0173 . Cone4ag0344 Lsi05g01749 . . Cme06g00473 Blo02g00759 Blo07g00275 Bda11g00642 . . Bpe13g00545 Bma02g00764 Bma06g01609 . Cmo06g01316 Cmo14g01867 . . . . . . . . . . . . . Cla05g00429 Cam05g0467 Cec05g0476 Cco05g0476 Clacu05g0464 Cmu05g0443 Cre05g0504 . Csa03g01191 Chy06g00455 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005316 1 1 2 3 2 1 2 1 1 1 1 1 2 1 0 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40