Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01751 ATGATGAAGAATACAGATGAATTTTGGCTTTACTCCGCCCGATTTCACTCGCCCGACTCTCAACTTGGGGTGCCATTCCAAGCAACCAAACAAACAACCATTGCGAATACTGAATTGAATCGAATTGAATTGCCATTGAATTCAATTATGACACAGTCAGGAGTTGGGTTGTTTAAAGCGCTTTTGCATTTACTAGCCATGTCTGTATCTGATGATGTCCTTCCCTTTCATCCATCTCCAGTTTCATTTAATCATTTCAATGGCAACCAGCTTGTCCTCCACTTTCGTAGCATGAGAGCAAAGGCCTGGATTGACGAACAAATTTTTGGGCTCAAGAGTAAATTCAAGAAGATGATAAATTGTATTCGTTCAGGGGATCAGTTAAGAGTAGATGAAATGATTCATTCATCAGATTCTCTGGCAACTCGAGACTATTCAGCTAGTGGTTTTTCATCCCGAACTGGCGAGGTGGAACAAAAGGTGGATAATGGCAACATTGAAGAAGCTGAATCATCTCTTCGTGAGAGTGGCTATTTGAATTATGAGGAAGCACGTGCTTTACTTGGAAGGCTGGAGTATCAAAAGGGTAACATAGAAGCTGCTCTTCATGTATTTGAAGGAATAGATATTGCTGCTGTAATTTCGAGGATAAAAGCTTCCATTTCAACGAGATACGAACAAAATAGGCGCCAATCACAAAGTGATGTTGTGCCTACTATGTCTATGCATGCAATTAGTTTACTTCTTGAAGCTATTTTTCTGAAAGCAAAATCATTACAGGGTTTAGGAAGGTTTGTAGAGGCGGCGAAATCATGCAAACTAATTTTAGACACTGTTGAATCTGCTTTCCCAGAAGGCTTACCTGAAAATTTTGCTAATGATTGTAAATTGCAACAGACATTAACAAAGGCTGTTGACTTACTTCCAGAATTATGGAAATCTGCTGGTTCTCCAGAAGAATCTATCTTGTCATATAGGCGTGCCCTTCTCTATCAATGGAATCTGGAAATGGAAACCAGAGCAAGAATAGAAAAAGAGTTTGCAATATTCCTTCTCTACAGTGGTTGTAATGCAAGTCCTCCAAATCTTCGTTCGCAGATGGAAAGCTCATTTGTGCCAAGAAATAATATGGAAGAGGCCATTCTTCTGTTAATGGATCTGATGAGAAAGTATATACTTGGATTGGTTGTATGGGACCCATCAATAATAGAGCATCTCTCTTTTGCACTGTCTATTTCAGGGGAATTTGGGGCTCTAGCTAATGAGGTTGAGCAATTGCCTCCTGGAATTATAGCAAGAAAAGAAAAATACTGTATCCTAGCACTTTGTTACTATGGGGAAGGTAAAAGCTTAGTTGCATTGAATCTTTTGAAGAACTTCTTGAGTAACATAGAGAACGTAGACTGCCCACTGGAATTGCTGCTGGCTTCAAAGCTCTGTGGAGAAAATTTGGTTTTTCTTGATGAGGGAGTGACATACACATTGAGAGTGCTTTCAGAGCTGCATGGTAAATGCATCCAGATGGCTTCTGTTGCTAATTGCTTACTTGGTGTGTTATTGTCAGCTATGTCCAAATTAGTTGCTTCAGATTCTCAGAAAACTTTGAAGCAGTCTGAAGCACTCAAGGCACTACAAACTGCTGAGCAACTGATGAGACAAAGAGATCCATTCATTGTTTATCATCTTTGTCTTGAATATGCTGAACAGAGGAAGCTGGATATTGCTGTATACTATGCAAAACAGCTAGTGAAGCTCGAGGCGGGCTCTAGTCTGAAGTCTTACATACTCTTGGCTAGAATATTGTCTGCCCAAAAACGGTTTGTGGATGCGGAGACTGTTCTCAATGCAGCTCTTGAGCAGACAGGGAAGTGGGAACAGGGGGAACTCTTACGAACTAAAGCTAAGCTCCAGATTGCACAGGGCCAGTTAAAGAACGGTATAGAAACATATAGTCATCTTCTTGCTATAATTCAAGTCCAGACCAAAAGTAGTGGAAAGATGCTTCCAAAGTATGTGAGAAAATCTGACAGAAGTCTGGAAGTAGATACATGGCATGACTTAGCCAATACTTACACAAGCTTGTCTCAGTGGCGGGATGCTGAGATCTGTCTCTCAAAATTGGAGGCAATCAATCCGTATTCTGCTTCCAAATGGCATTCCACAGGTTTACTCTATGAGTCGAAGGGTCTTCCACGAGATGCTTTGCAAGCATACAACAAAGCATTGGACATTGATCCTGGCCATGTTCCCAGCTTGATATCCACTGCCTGTCTTCTCCAACAGTTAGGCGGCAACCAGTCGTTTCCTGTGGTAAGAAGCTTGCTAACTGATGCCCTTCGACTAGATCGAGCAAATCCATCTGCGTGGTACAGTCTCGGGATGCTATATAAAGCTGACATTGGGGCATCGGCACTGGAGATTGCTGAATGCTTTGAAGCTGCAACCCTGCTTGAAGAGTCAGCACCAGTTGAACCTTTCAGATGA 2484 41.63 MMKNTDEFWLYSARFHSPDSQLGVPFQATKQTTIANTELNRIELPLNSIMTQSGVGLFKALLHLLAMSVSDDVLPFHPSPVSFNHFNGNQLVLHFRSMRAKAWIDEQIFGLKSKFKKMINCIRSGDQLRVDEMIHSSDSLATRDYSASGFSSRTGEVEQKVDNGNIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEAALHVFEGIDIAAVISRIKASISTRYEQNRRQSQSDVVPTMSMHAISLLLEAIFLKAKSLQGLGRFVEAAKSCKLILDTVESAFPEGLPENFANDCKLQQTLTKAVDLLPELWKSAGSPEESILSYRRALLYQWNLEMETRARIEKEFAIFLLYSGCNASPPNLRSQMESSFVPRNNMEEAILLLMDLMRKYILGLVVWDPSIIEHLSFALSISGEFGALANEVEQLPPGIIARKEKYCILALCYYGEGKSLVALNLLKNFLSNIENVDCPLELLLASKLCGENLVFLDEGVTYTLRVLSELHGKCIQMASVANCLLGVLLSAMSKLVASDSQKTLKQSEALKALQTAEQLMRQRDPFIVYHLCLEYAEQRKLDIAVYYAKQLVKLEAGSSLKSYILLARILSAQKRFVDAETVLNAALEQTGKWEQGELLRTKAKLQIAQGQLKNGIETYSHLLAIIQVQTKSSGKMLPKYVRKSDRSLEVDTWHDLANTYTSLSQWRDAEICLSKLEAINPYSASKWHSTGLLYESKGLPRDALQAYNKALDIDPGHVPSLISTACLLQQLGGNQSFPVVRSLLTDALRLDRANPSAWYSLGMLYKADIGASALEIAECFEAATLLEESAPVEPFR 827
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24912925 24918225 + Lsi05G017510.1 Lsi05g01751 664243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01751 827 SMART tpr_5 715 748 IPR019734 GO:0005515
Lsi05g01751 827 SMART tpr_5 249 282 IPR019734 GO:0005515
Lsi05g01751 827 SMART tpr_5 681 714 IPR019734 GO:0005515
Lsi05g01751 827 SMART tpr_5 591 624 IPR019734 GO:0005515
Lsi05g01751 827 SMART tpr_5 627 660 IPR019734 GO:0005515
Lsi05g01751 827 PANTHER OS10G0471400 PROTEIN 111 827 - -
Lsi05g01751 827 PANTHER PROTEIN NPG1 111 827 IPR043376 -
Lsi05g01751 827 Gene3D Tetratricopeptide repeat domain 667 823 IPR011990 GO:0005515
Lsi05g01751 827 Gene3D Tetratricopeptide repeat domain 512 666 IPR011990 GO:0005515
Lsi05g01751 827 SUPERFAMILY TPR-like 628 797 IPR011990 GO:0005515
Lsi05g01751 827 Pfam Tetratricopeptide repeat 722 747 IPR019734 GO:0005515
Lsi05g01751 827 Pfam Tetratricopeptide repeat 565 620 - -
Lsi05g01751 827 ProSiteProfiles TPR repeat profile. 715 748 IPR019734 GO:0005515
Lsi05g01751 827 SUPERFAMILY TPR-like 537 655 IPR011990 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01901 Lsi-Chr4:26172695 Lsi05g01751 Lsi-Chr5:24912925 0 transposed
Lsi08g01530 Lsi-Chr8:23345845 Lsi05g01751 Lsi-Chr5:24912925 0 transposed
Lsi05g01037 Lsi-Chr5:17918214 Lsi05g01751 Lsi-Chr5:24912925 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01751 K21843 - csv:101206105 1342.02