Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01752 ATGGCGTTATCCCTTCTTCGAGCTATGGCTTCCGCCTCCACCTCCACTGCCCGCCTCTCTCTTCTTCACAGACGCCTCTTCTCCTCCTCAACTACTCTTACACATCCTCCTTCACCCCCTTCTCTCACTCTCTGCCGTCGATCTCTCCCTCCCCTTTCCCATGCCGTTCGATCTATCCCTTCCGCCTCCAGGTTCACCTCTATTCGTTGCCGCGTCAATCGCTCAGGTAACTCGTCTTACTCTCCCCTTAACTCTAATTCCAACTTCAGTGATCGTCCACCCACTGAGATGGCGCCTCTTTTCCCTGGATGTGACTATGAGCACTGGCTCATTGTCATGGACAAGCCTGGTGGTGAGGGTGCCACTAAGCAGCAGATGATCGATTGCTACATTCAGACCCTCGCTAAAGTTGTTGGCAGTGAAGAGGAAGCGAAGAAGAAGATTTATAATGTGTCTTGTGAGAGGTATTTTGGGTTTGGGTGTGAGCTTGATGAAGAGACCTCCAACAAGCTCGAAGGCTTGCCAGGCGTTCTGTTTGTTCTTCCTGATTCTTATGTCGACCCTGAGTATAAAGACTATGGGGCTGAGTTGTTCGTGAATGGAGAGATTGTTCAAAGGTCACCAGAAAGACAGAGAAGGGTGGATCCACAGCCTCAGAGAGTTCAAGATAGACCGAAGTATAGCGACAGGACCCGCTATGTGAGACGCAGAGAAAACATGAGCCCAAACAGCATTATCCAGCCCAACAACAAAAGAAGCTTATCCCCTTCTCCTTCAGAAACTCAACCAGACGTTTCTCCAACTTACAAAGATAACCATCACTCCACACATAAACTCTCCTCACTAACAATGGCGGCTTCCGTCGTCTTAGGCTTCACGCCGGCCACTTCTTCCGGTGTAATGGCACTCTCCTCAACTAAACTTCACTTCAGAACTAAAGCGAATTCCCAGCTAGGGTTTCTTACTTCTCAATTGGCTGGCATCAAAATCTCCTCCAACCACTCGCTGATCTCCCCCTCTCCCATTTCTACTGCTCCTCTCAGACCTCCCCTTCAACCTGTTGCTCGTAGAGTTTGTCCCTTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAAGACCAAGAAGTTGCAGTTTGTAAATCTTCAATACAAGAAGGTTTGGTGGGAAGCTGGGAAGCGTTTTGTCAAACTACGCTTGTCAACTAAGGCTTTGAAGACCATTGAGAAGAATGGACTTGATGCTGTGGCTAAGAAGGCTGGAATTGATCTTCGTAAGGAATGA 1299 48.11 MALSLLRAMASASTSTARLSLLHRRLFSSSTTLTHPPSPPSLTLCRRSLPPLSHAVRSIPSASRFTSIRCRVNRSGNSSYSPLNSNSNFSDRPPTEMAPLFPGCDYEHWLIVMDKPGGEGATKQQMIDCYIQTLAKVVGSEEEAKKKIYNVSCERYFGFGCELDEETSNKLEGLPGVLFVLPDSYVDPEYKDYGAELFVNGEIVQRSPERQRRVDPQPQRVQDRPKYSDRTRYVRRRENMSPNSIIQPNNKRSLSPSPSETQPDVSPTYKDNHHSTHKLSSLTMAASVVLGFTPATSSGVMALSSTKLHFRTKANSQLGFLTSQLAGIKISSNHSLISPSPISTAPLRPPLQPVARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24917126 24924890 - Lsi05G017520.1 Lsi05g01752 664244

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01752 432 MobiDBLite consensus disorder prediction 207 276 - -
Lsi05g01752 432 Pfam Ribosomal L28 family 357 415 IPR026569 GO:0003735
Lsi05g01752 432 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 104 187 IPR037045 -
Lsi05g01752 432 TIGRFAM L28: ribosomal protein bL28 357 412 IPR001383 GO:0003735|GO:0005840|GO:0006412
Lsi05g01752 432 Hamap 50S ribosomal protein L28 [rpmB]. 354 430 IPR001383 GO:0003735|GO:0005840|GO:0006412
Lsi05g01752 432 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2 CHLOROPLASTIC 8 240 - -
Lsi05g01752 432 Gene3D Ribosomal protein L28/L24 356 432 IPR037147 GO:0003735
Lsi05g01752 432 MobiDBLite consensus disorder prediction 238 269 - -
Lsi05g01752 432 SUPERFAMILY L28p-like 357 429 IPR034704 -
Lsi05g01752 432 MobiDBLite consensus disorder prediction 207 237 - -
Lsi05g01752 432 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 8 240 IPR039206 GO:0016554
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01752 - - - bhj:120084678 409.453
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01752 Lsi-Chr5:24917126 Lsi07g00294 Lsi-Chr7:3169276 1.47E-20 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g751 Blo01g00063 Blo12g00141 Bda03g01090 . Bpe04g00988 . Bma04g01015 Bma05g01248 . . Cma06g01306 Cma14g01830 Car06g01120 . . Cpe08g00349 Cpe03g01533 . . . . . . . . . . . . . . . . . . Lsi05g01752 . . Cme06g00469 . . . . Bpe05g01102 . . . . Cmo06g01313 Cmo14g01871 . . . . . . . . . . . . . Cla05g00425 Cam05g0462 Cec05g0470 Cco05g0471 Clacu05g0459 Cmu05g0438 Cre05g0499 . Csa03g01187 Chy06g00451 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005046 1 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 2 1 2 41