Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01760 ATGGGGCACAGCCATAACGTCCGCCGTGAGTCCTTGTCAGGGCATTTATCCGTTGCCCGACCGGACTACCACGTCGACGTTTTCGAGAACGATCTGGTATGGCCGTTCAACAAGCTCGACGGAATTGACCGTGATAACGTCCGTGAGACCGCCTACGAGATCTTCTTCACGGCTTGCCGCTCCTCGCCGGGCTTCGGAGGTCGGAACGCTCTCGCATTTTACTCCTCTTCTAATAATGACAATGCCGATGGCGGCTCGGGCCCCAAGCCTAATGGGGTTGTGATGACACCCACTAGTCGGATCAAGCGAGCACTTGGGTTGAAGATGTTGAAACGATCACCATCTAGGAGAATGTCGTCCGGCGGGAATAGCGGTTCTAATCCATCCTCCCCTAGCTCTCATAGTTCCAGTGGGTCTAGCCCTGCTTTGTCGTATACTTTGCCGTCACCAAGACCGCGTCGGCCGATGACGTCGGCTGAGATTATGAGACAGCAGATGAAGGTTACAGAGCAGAGTGATAATAGGCTTAGGAAAACTCTCATGAGGACTCTTGTTGGCCAAATGGGAAGACGAGCAGAGACCATAATTCTTCCATTGGAGCTTTTACGACATCTAAAGCCATCCGAATTCAATGACGGAAACGAATACCATTTATGGCAGAAACGACAGTTGAAGATTCTTGAGGCAGGGCTTCTTCTTCACCCTTCCATTGCACTTGATAAATCAAACACATTTGCAATGCGTCTTAGGGAGATCATTCGTGGGTGTGAATCAAAGCCCATTGACACAGGGAAAAACTCTGACACAATGAGAACGCTTTGCAATTCTGTTGTGTCATTGTCTTGGCGCAGTGCTAACGGAACTCCAACCGATGTGTGCCATTGGGCTGATGGTTTCCCTCTTAACATTCACATCTATGTTGCTCTTCTTCAAGCCATTTTTGACGTCCGAGACGAGACACTAGTACTCGATGAGGTTGACGAACTTCTCGAGCTAATGAAGAAGACGTGGTCGACATTGGGAATAACTAGGCCAGTTCATAATGTGTGTTTCACATGGGCATTGTTCCAACAATATGTTGTGACAGCACAACTTGAGCCAGACCTTCTTTGTGCTGCTCATGCTATGTTGGCAGAGGTGGCCAACGACGCCAAGAAGCCAGATCGTGAGGCGGTATACGTTAAGCTTTTGTCGTCGGTGTTGTCTTCGATGCAGGGTTGGGCAGAGAAGAGGTTACTTCATTACCATGATTATTTCCAGAGGGGGACAGTTGGTCAGGTAGAAAACCTTCTTCCCTTAGCCTTATCTGCATCAAAGATTCTCGGTGAAGATGTTACTATCACAGAAGGGGCAGGGCAAGACCAGGGAGATATATTGGTGGTGGATTCGTCTGGTGATCGTGTCGATTACTACATCCGATGTTCAGTAAGGAACGCGTTTGCCAAGGTACTTGAGAATGGGAACATCAAGGAAGTAAAAGGTGAGGCAAGCGAGGCTCTGCTTCAGTTGGCAAAGGAAACAGAGGATTTGGCATTAAAAGAGAGGGAAAGCTTCAGTCCTATACTAAAGAAATGGCATCCAACTGCAGTTGGAGTTGCGGCAGTTACATTGCACAATTGCTATGGTACTATGTTGAAGCAATATTTAGGTGGGGTTTCTATGTTAACGAGCGAGACGATAGGTGTTTTGCATAGGGCCGGAAAATTAGAGAAGGTGCTAGTTCAAATGGTGGTTGAGGATTCTGTCGACTGCGACGACGGTGGCAAGGCCATTGTCAGAGAGATGGTTCCTTTTGAAGTTGATTCCATTATAATGAACCTCTTGAAAAAATGGGTTGATGAGAGGTTAAAGAAACAAAGAGATTGTCTTAGCAGAGCAAAAGAATCAGAAACATGGAATCCAAGGTCCAAAACGGAACCATACGCGCAGTCGGCAGTGGAGTTGATGAAGCAAGCTAAGGAAACTGTGGAGGAGTTCTTTGAAATTCCTATTGGAGTTACAGAAGATTTGGTTCAAGACCTAGCTGCTGGTTTAGAGCATATCTTCCAAGACTATATCACATTTGTGGCATCATGTGGTTCAAAACAGAGCTACCTCCCACAGCTTCCTCCTCTAACCCGGTGTAATCGAGATTCGAAGTTTGCCAAGTTGTGGAAGAGAGCCACTCCTTGTAGTGTTGTTGGAGAAGATATGATGCATCATATTGGTTCTCACGAAGGTCATCACACACGACCGTCGACCAGCCGTGGAACCCAACGCCTATACATTCGCTTGAACACATTGCATTATATATTTTCCCACCTACATTCACTTGACAAAGTTCTTTCCCTTTCTCCTAGAGTCACTCCTCCAACCAACAACCGTTTTAACAGTACTAGATCTTATAGCAACTCATCTTCTTACTTTGAACTTGCCAACTCAGGCATTGAATCAGCTTGTCAACATGTATCAGAAGTAGCTGCTTATCGTCTGATATTCCTCGATTCAACTTCCGTCTTTTATGATTGCTTGTATGCAGGCGATGTAGCGAATGCACGGATTCGACCAGCATTGCGAGTTTTAAAACAGAACCTTACGTTATTATGTGCAATTGTAACTGATAGAGCTCAGGCCTTAGCAATGAAAGAAGTGATGAGAGCTGCTTTTGAAGCATTTTTAATGGTTCTTCTAGCCGGAGGATCATCTAGAGTGTTCTATCGTTCTGACCACGAGATGATTGAGGATGATTTTGAAAGCTTGAAAAAGGTATTCTGTGCATGTGGAGAGGGATTGATTGCAGAGAATATTGTCGAGCGAGAAGCCGAGGCAGTTGAAGGAGTGATATCATTGATGAGCCAAGTTACTGAACAACTGGTGGAAGATTTCAGCATTGTGACTTGTGAAACAAGTGGAATAGGAGTTATGGGTTCTGGACAAAAGCTACCTATGCCTCCAACGACAGGACGATGGAATAGAGCCGATCCGAACACCATTTTACGGGTTTTGTGCCACCGGAATGATCGAGCCGCCAATCAATTCTTAAAGAGAACATTCCAATTAGCAAAAAGAAGATGA 3054 45.87 MGHSHNVRRESLSGHLSVARPDYHVDVFENDLVWPFNKLDGIDRDNVRETAYEIFFTACRSSPGFGGRNALAFYSSSNNDNADGGSGPKPNGVVMTPTSRIKRALGLKMLKRSPSRRMSSGGNSGSNPSSPSSHSSSGSSPALSYTLPSPRPRRPMTSAEIMRQQMKVTEQSDNRLRKTLMRTLVGQMGRRAETIILPLELLRHLKPSEFNDGNEYHLWQKRQLKILEAGLLLHPSIALDKSNTFAMRLREIIRGCESKPIDTGKNSDTMRTLCNSVVSLSWRSANGTPTDVCHWADGFPLNIHIYVALLQAIFDVRDETLVLDEVDELLELMKKTWSTLGITRPVHNVCFTWALFQQYVVTAQLEPDLLCAAHAMLAEVANDAKKPDREAVYVKLLSSVLSSMQGWAEKRLLHYHDYFQRGTVGQVENLLPLALSASKILGEDVTITEGAGQDQGDILVVDSSGDRVDYYIRCSVRNAFAKVLENGNIKEVKGEASEALLQLAKETEDLALKERESFSPILKKWHPTAVGVAAVTLHNCYGTMLKQYLGGVSMLTSETIGVLHRAGKLEKVLVQMVVEDSVDCDDGGKAIVREMVPFEVDSIIMNLLKKWVDERLKKQRDCLSRAKESETWNPRSKTEPYAQSAVELMKQAKETVEEFFEIPIGVTEDLVQDLAAGLEHIFQDYITFVASCGSKQSYLPQLPPLTRCNRDSKFAKLWKRATPCSVVGEDMMHHIGSHEGHHTRPSTSRGTQRLYIRLNTLHYIFSHLHSLDKVLSLSPRVTPPTNNRFNSTRSYSNSSSYFELANSGIESACQHVSEVAAYRLIFLDSTSVFYDCLYAGDVANARIRPALRVLKQNLTLLCAIVTDRAQALAMKEVMRAAFEAFLMVLLAGGSSRVFYRSDHEMIEDDFESLKKVFCACGEGLIAENIVEREAEAVEGVISLMSQVTEQLVEDFSIVTCETSGIGVMGSGQKLPMPPTTGRWNRADPNTILRVLCHRNDRAANQFLKRTFQLAKRR 1017
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24972303 24976345 - Lsi05G017600.1 Lsi05g01760 664252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01760 1017 ProSiteProfiles Munc13-homology domain 2 (MHD2) profile. 844 955 IPR014772 -
Lsi05g01760 1017 Coils Coil 489 516 - -
Lsi05g01760 1017 MobiDBLite consensus disorder prediction 116 146 - -
Lsi05g01760 1017 MobiDBLite consensus disorder prediction 104 155 - -
Lsi05g01760 1017 PANTHER PROTEIN UNC-13 HOMOLOG 6 1017 IPR008528 -
Lsi05g01760 1017 PANTHER OS02G0796200 PROTEIN 6 1017 - -
Lsi05g01760 1017 ProSiteProfiles Munc13-homology domain 1 (MHD1) profile. 560 702 IPR014770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01760 - - - csv:101210328 1860.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01760 Lsi-Chr5:24972303 Lsi08g01083 Lsi-Chr8:19394258 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g755 . . . . . Bpe14g01273 . . . . Cma06g01302 Cma14g01835 Car06g01119 Car14g01643 Sed02g1443 Cpe08g00351 Cpe03g01536 Bhi01g00689 Tan10g0650 Cmetu06g2335 . Hepe05g1682 . Lcy11g1695 . . . . . . . Cone14ag0170 . . Cone4ag0354 Lsi05g01760 . . Cme06g00460 Blo02g00767 Blo07g00281 Bda11g00644 . . Bpe13g00542 Bma02g00757 Bma06g01613 . Cmo06g01311 Cmo14g01876 . . . . . . . . . . . . . Cla05g00419 Cam05g0457 Cec05g0464 Cco05g0466 Clacu05g0454 Cmu05g0432 Cre05g0493 . Csa03g01181 Chy06g00443 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005317 1 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40