Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01762 ATGGCTTGCTTTCAGAGAGCTTCACCAGCTTTGAAGGAGATCCTCCTTAAACTGTGCAGTTTGGAAAAGCCCACAGAAATTGAGCATCACTTGCATGAATATGGTTCTGTTCAGTACCATATCCAGTCTTCCATATCAGAACCACAGCAAATTTACTTGTCAATTTCCACTCCATTGTTGTCACAAGGGGTTATATCTAATGGACTCTCGTCGTACACTGTTGAGATGGTAAAACAAATTTGCTCTCATGCTGTTGAGATCATTGAACCTGCAAAAGAAGGATACCAACTTACTCTAAGAATCAACTCTGCAAAAATTTTGAATGGGGAAGAGTCAGAAAAGATCATTACAGACATTGCTGCTGTCCAAGCGGTGATCATAAGTTCTCAGCTGAAAGAAATGTTGAGAGATGTTAATTCACCGGCTCTATTTCAAGGAACCTCCAGACCCATCAAACTTGTATATCATCCAAGGGAACCATTCTTTGTCATCAAGCAGGCAATGTGCCCGTTCTTAATAAACCCCTTCCTGTGCAAACAGATGAATACTAGACAAATTTCTTGCATTCAGCCCCAAAAGATCCTCATAATCTACCCAATTCGTTTCAAGGAAGATACAGATGTGATCATTGCAACAGCTTTTTTCCGGGAACTTATGGATGTGGGAAGCTCTGAAAAATGGTCGAAAGCACCTCCCTGCTGTTGGTCACCCATACCCCCTCCAGAACTGAGAGGCGAACCTTTAGAAGAATTGAGCACCAATGGAGGATTTGTCACCTTTGATATTTCTCTGCACCACGTTGAAGGTAAAAGACTTGACAAGACCGTGTGGAGTTTGCTGAACTTTAATGCATATGTTAAGTACCATGTAAAGACAACCAGAGGTTTTATCCAGAGAAGGATGAGGAAGCGGTTAGAAGGGCTTGTTGAGATCCTACATCAGAAAACTTCAGATGATGCTGCACTCAACAAGGGTCAAGGCATTATGTACATGAAAAAATTGGTAGCTAGAACTAGACGCATCAAACAGAAATGTCGCAGCTTGAGTAGGAAGATCAAGAGAATCCAATTTCGAATTCGAATCCCTGGATTCGCACGGTTTCGTCGAAGATGGCTAAAATTCCCAAAGTTTTCTTCTTCAATTCAATACACCAGATTGAAATGA 1164 41.41 MACFQRASPALKEILLKLCSLEKPTEIEHHLHEYGSVQYHIQSSISEPQQIYLSISTPLLSQGVISNGLSSYTVEMVKQICSHAVEIIEPAKEGYQLTLRINSAKILNGEESEKIITDIAAVQAVIISSQLKEMLRDVNSPALFQGTSRPIKLVYHPREPFFVIKQAMCPFLINPFLCKQMNTRQISCIQPQKILIIYPIRFKEDTDVIIATAFFRELMDVGSSEKWSKAPPCCWSPIPPPELRGEPLEELSTNGGFVTFDISLHHVEGKRLDKTVWSLLNFNAYVKYHVKTTRGFIQRRMRKRLEGLVEILHQKTSDDAALNKGQGIMYMKKLVARTRRIKQKCRSLSRKIKRIQFRIRIPGFARFRRRWLKFPKFSSSIQYTRLK 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24985350 24989035 + Lsi05G017620.1 Lsi05g01762 664254

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01762 387 PANTHER ARP2/3 COMPLEX 34 KDA SUBUNIT 190 386 IPR007188 GO:0005885|GO:0015629|GO:0030833|GO:0034314
Lsi05g01762 387 PANTHER ARP2/3 COMPLEX 34 KDA SUBUNIT 1 168 IPR007188 GO:0005885|GO:0015629|GO:0030833|GO:0034314
Lsi05g01762 387 Gene3D - 1 131 IPR034666 GO:0005885|GO:0015629|GO:0030041|GO:0030833|GO:0034314
Lsi05g01762 387 SUPERFAMILY Arp2/3 complex subunits 138 315 IPR034666 GO:0005885|GO:0015629|GO:0030041|GO:0030833|GO:0034314
Lsi05g01762 387 Pfam Arp2/3 complex, 34 kD subunit p34-Arc 192 314 IPR007188 GO:0005885|GO:0015629|GO:0030833|GO:0034314
Lsi05g01762 387 Gene3D - 132 332 IPR034666 GO:0005885|GO:0015629|GO:0030041|GO:0030833|GO:0034314
Lsi05g01762 387 PANTHER ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 2B 190 386 - -
Lsi05g01762 387 PANTHER ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 2B 1 168 - -
Lsi05g01762 387 SUPERFAMILY Arp2/3 complex subunits 1 125 IPR034666 GO:0005885|GO:0015629|GO:0030041|GO:0030833|GO:0034314
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01762 K05758 ARPC2; actin related protein 2/3 complex, subunit 2 - csv:101204911 630.943
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00003 Lsi-Chr1:70732 Lsi05g01762 Lsi-Chr5:24985350 2.85E-57 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g768 . . . . . Bpe14g01274 . . . . . Cma14g01837 . Car14g01645 . . . Bhi01g00686 Tan10g0647 . . Hepe05g1684 . Lcy11g1697 . . . . . . . . . Cone7ag0343 . Lsi05g01762 . . Cme06g00459 Blo02g00768 . . Bda13g00044 . . Bma02g00755 . . . Cmo14g01878 . . . . . . . . . . . . . Cla05g00417 Cam05g0455 Cec05g0462 Cco05g0464 Clacu05g0452 Cmu05g0430 Cre05g0491 . Csa03g01179 Chy06g00441 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009192 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 1 3 1 34