Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01766 ATGAACTGCTCCATCTCCGGTGAGATTCCGGAAGAGCCAGTTGTCTCCAGGAATTCTGGACTACTCTTCGAGAAGCGCTTAATCGAGAGGCACATTTTGGACTATGGGAAATGCCCTGTTACGGGTGAACCGCTTTCCATCGATGACATTGTTCCAATTAAAACTGGAAAGATAGTCAAGCCCAGGCAAGCTGCTAGCATCCCTGGAATGCTTGGAATGTTCCAGAATGAATGGGATGTTTTGGTGCTGTCCAATTTTGCATTAGAACAACAGCTGCATACAGCTAGACAGGAGCTTAGTCATGCCTTGTATCAGCATGATGCTGCATGTCGTGTGATTGCAAGACTTAAAAAAGAACGGGATGAAGCCAGGTCCTTACTTGCTCAGGCAGAGAGGCAGATGCCTTTGTCATCAACTTCATTTGCATCCAATGCTGCTGCTGTCAATGTTAATGGGAAAAGAGTTAATGAGGATGAGGAATTGGGTCCTGATGGGAAGAAAATACGTCCAGGAATATCAGCCACTGTTATCTCTGAGCTCACAGATTGTAATGCTGCTCTATCACAACAAAGGAAGAGGCGGCAGATACCTCCTACGTTGGTGCCTGTTGAAGCTCTAGAAACTTACACCCAGATTTCTAGTCATCCACTTCATAAAACAAGCAAACCAGGCATTATATCTCTTGACATCCATCATGAGAAGGATGTCATTGCGACTGGAGGGCTGGACACAAATGCTGTTCTTTTTAGTCGATCATCTGGGGAGATTTTATCTACACTAAGTGGCCATTCAAAGAAGGTAACAAGTGTCAAATTTGTGGGCCGAGATGATTTATTCTTGACTGGTTCAGCTGACAAGACTGTCCGTGTTTGGCAACAATCTGATGATGGGAACTACAATTGTAGGCACATTTTAAAGGATCATACAGCTGAGGTCCAAGCTGTTACCGTCCATGCTACCAATAACTTCTTTGTCACTGCCTCCCTTGATAACACATGGTGTTTTTATGAGCTTGCTTCAGGATTATGCCTGACCCAGGTTGCAGAGGATTCAGAAACGGAGGGCTACACATCTGCTGCCTTCCATCCTGATGGTCTCATCCTTGGAACAGGCACGTCAGAGGCTCTTGTTAAAATTTGGGATGTAAAAAGTCAGAAAAATGTGGCCAAATTTGATGGACACGTTGGTGCAGTAACTGCAATATCTTTTTCTGAAAATGGTTATTTCCTTGCGACTGCAGCTCATGATGGAGTAAAGCTGTGGGACCTTCGAAAATTGAAGAACTTCCGTACATTTGCACCTTATGATTCAGAAACTCCAACAAACTCTGTGGACTTTGATCATAGTGGATCTTACCTTGCGATTGCTGGCTCAGACATAAGGGTTTACCAAGTTGCTAGTGTGAAATCTGAATGGAATTGCATCAAAACTATTCCAGATTTGTCCGGCACAGGGAAAGCAACTTGTCTAAAATTTGGACCGGATGCAAAATACTTGGCAGTCGGGTCAATGGATCGAAATCTTCGAATTTTTGGTGTGCCTGGGGAAGATGGTGCCATGGAGGCATGA 1569 44.3 MNCSISGEIPEEPVVSRNSGLLFEKRLIERHILDYGKCPVTGEPLSIDDIVPIKTGKIVKPRQAASIPGMLGMFQNEWDVLVLSNFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQAERQMPLSSTSFASNAAAVNVNGKRVNEDEELGPDGKKIRPGISATVISELTDCNAALSQQRKRRQIPPTLVPVEALETYTQISSHPLHKTSKPGIISLDIHHEKDVIATGGLDTNAVLFSRSSGEILSTLSGHSKKVTSVKFVGRDDLFLTGSADKTVRVWQQSDDGNYNCRHILKDHTAEVQAVTVHATNNFFVTASLDNTWCFYELASGLCLTQVAEDSETEGYTSAAFHPDGLILGTGTSEALVKIWDVKSQKNVAKFDGHVGAVTAISFSENGYFLATAAHDGVKLWDLRKLKNFRTFAPYDSETPTNSVDFDHSGSYLAIAGSDIRVYQVASVKSEWNCIKTIPDLSGTGKATCLKFGPDAKYLAVGSMDRNLRIFGVPGEDGAMEA 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25020334 25027959 + Lsi05G017660.1 Lsi05g01766 664258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01766 522 Pfam Prp19/Pso4-like 64 129 IPR013915 -
Lsi05g01766 522 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 260 292 - -
Lsi05g01766 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 391 431 IPR001680 GO:0005515
Lsi05g01766 522 Gene3D - 200 513 IPR015943 GO:0005515
Lsi05g01766 522 PANTHER PRE-MRNA-PROCESSING FACTOR 19 1 521 IPR038959 GO:0000398|GO:0000974|GO:0006281|GO:0061630
Lsi05g01766 522 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 60 IPR013083 -
Lsi05g01766 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 349 390 IPR001680 GO:0005515
Lsi05g01766 522 SUPERFAMILY WD40 repeat-like 221 511 IPR036322 GO:0005515
Lsi05g01766 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 260 292 IPR001680 GO:0005515
Lsi05g01766 522 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 391 424 - -
Lsi05g01766 522 SUPERFAMILY RING/U-box 1 53 - -
Lsi05g01766 522 CDD WD40 224 511 - -
Lsi05g01766 522 Pfam WD domain, G-beta repeat 474 511 IPR001680 GO:0005515
Lsi05g01766 522 Pfam WD domain, G-beta repeat 386 422 IPR001680 GO:0005515
Lsi05g01766 522 Pfam WD domain, G-beta repeat 255 291 IPR001680 GO:0005515
Lsi05g01766 522 ProSiteProfiles U-box domain profile. 1 70 IPR003613 GO:0004842|GO:0016567
Lsi05g01766 522 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 349 384 - -
Lsi05g01766 522 SMART Ubox_2 1 66 IPR003613 GO:0004842|GO:0016567
Lsi05g01766 522 CDD RING-Ubox_PRP19 3 54 - -
Lsi05g01766 522 Coils Coil 113 133 - -
Lsi05g01766 522 SMART WD40_4 384 422 IPR001680 GO:0005515
Lsi05g01766 522 SMART WD40_4 208 250 IPR001680 GO:0005515
Lsi05g01766 522 SMART WD40_4 253 292 IPR001680 GO:0005515
Lsi05g01766 522 SMART WD40_4 425 464 IPR001680 GO:0005515
Lsi05g01766 522 SMART WD40_4 471 512 IPR001680 GO:0005515
Lsi05g01766 522 SMART WD40_4 298 337 IPR001680 GO:0005515
Lsi05g01766 522 SMART WD40_4 340 381 IPR001680 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01766 Lsi-Chr5:25020334 Lsi08g00743 Lsi-Chr8:15768189 6.91E-06 dispersed
Lsi05g01766 Lsi-Chr5:25020334 Lsi02g02285 Lsi-Chr2:29422484 9.95E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01766 K10599 - csv:101204424 1014.99