Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01774 ATGGCCGCCGCCGCCGCCGCCGCCGGAGCCTCCTTCTTCACCACTCCCTTAAGGGGTTCACGGTCCAAGCACTGGCTCTCTGATTCTCTCCTCGCAACCCCATCCACGCAAGTGTTGCCCATATTGTCCCGCTCTCTGGCCATTGAATCAGTTCCACTCAGAGCTTTCTCGGAGAGGTGGCGGCCGGTTCTTTTCATCTCGGCCGCCGTTGTGCAAGGAGAGGCGGCTGTGACGGTGGGGGTTGAAGAGGAGACGGCGGAGAAGGGAGGAGGGGAGGCGGTGGATGGTGGTTCTCCAGTGGAGTCCGGGAGTACTAAGCTGTATTTTGGGAATTTGCCTTACAGTGTTGATAGTTCCCAGCTCGCCGCCATTGTTCAGGATTATGGGGTCGCCGAGCTTATTGAGGTTCTGTATGACAGGAATACTGGAAAAAGCAGAGGATTCGCATTTGTAACCATGAGCAGTATTGAAGATTGCAATAAAGTCATTGAAAATCTAGATGGAACTGCTTACATGGGCAGAATTTTGAGAGTTAATTTCTCAGACAAACCTAAGCCCAAGGAACCTTTATATCCAGAAACTGAGTATAAACTTTTTGTCGGAAACTTATCCTGGTCAGTAACATCTGAAAGTTTGACACAAGCATTTCAAGAATATGGAAATGTGGTAGGAGCAAGGGTTATTTATAACGGGGAGACTGGAAAGTCACGTGGTTATGGCTTTGTTTCTTACTCAACAAAATCAGAGATGGAAACAGCTCTTGAAGCTCTTAATGAAGTGGAACTTGAAGGCAGGGTAATACGTGTAAGCTTGGCTGAAGGAAAACAGGCACAGGGGTAA 840 48.81 MAAAAAAAGASFFTTPLRGSRSKHWLSDSLLATPSTQVLPILSRSLAIESVPLRAFSERWRPVLFISAAVVQGEAAVTVGVEEETAEKGGGEAVDGGSPVESGSTKLYFGNLPYSVDSSQLAAIVQDYGVAELIEVLYDRNTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRILRVNFSDKPKPKEPLYPETEYKLFVGNLSWSVTSESLTQAFQEYGNVVGARVIYNGETGKSRGYGFVSYSTKSEMETALEALNEVELEGRVIRVSLAEGKQAQG 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25057286 25060950 + Lsi05G017740.1 Lsi05g01774 664266

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01774 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 183 IPR000504 GO:0003723
Lsi05g01774 279 SUPERFAMILY RNA-binding domain, RBD 100 188 IPR035979 GO:0003676
Lsi05g01774 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 274 IPR000504 GO:0003723
Lsi05g01774 279 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 187 276 - -
Lsi05g01774 279 SMART rrm1_1 197 270 IPR000504 GO:0003723
Lsi05g01774 279 SMART rrm1_1 106 179 IPR000504 GO:0003723
Lsi05g01774 279 SUPERFAMILY RNA-binding domain, RBD 191 276 IPR035979 GO:0003676
Lsi05g01774 279 Gene3D - 73 185 IPR012677 -
Lsi05g01774 279 PANTHER TRANSFORMER-2-RELATED 187 276 - -
Lsi05g01774 279 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 83 144 - -
Lsi05g01774 279 PANTHER 31 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 141 181 - -
Lsi05g01774 279 PANTHER TRANSFORMER-2-RELATED 141 181 - -
Lsi05g01774 279 PANTHER TRANSFORMER-2-RELATED 83 144 - -
Lsi05g01774 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 268 IPR000504 GO:0003723
Lsi05g01774 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 176 IPR000504 GO:0003723
Lsi05g01774 279 Gene3D - 186 279 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01774 - - - csv:101203203 447.588
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01774 Lsi-Chr5:25057286 Lsi06g01603 Lsi-Chr6:26406577 6.36E-43 dispersed
Lsi07g00691 Lsi-Chr7:7440160 Lsi05g01774 Lsi-Chr5:25057286 1.58E-07 dispersed
Lsi09g01713 Lsi-Chr9:25690614 Lsi05g01774 Lsi-Chr5:25057286 6.64E-19 dispersed
Lsi10g01427 Lsi-Chr10:18358591 Lsi05g01774 Lsi-Chr5:25057286 3.14E-09 dispersed
Lsi05g01774 Lsi-Chr5:25057286 Lsi02g02602 Lsi-Chr2:32407727 5.72E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g784 . . Bda03g01097 . Bpe04g00983 . Bma04g01022 . . . . Cma14g01844 . . . Cpe08g00361 Cpe03g01544 . . . . . . . . . . . . . . Cone14ag0183 Cone15ag0192 . . Lsi05g01774 . . Cme06g00447 . . . . . . . . . Cmo06g01297 Cmo14g01887 . . . . . . . . . . . . . Cla05g00406 Cam05g0443 Cec05g0451 Cco05g0451 Clacu05g0440 Cmu05g0418 Cre05g0480 . Csa03g01166 Chy06g00428 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012811 1 0 0 1 1 1 1 1 1 1 1 1 1 0 1 2 1 2 2 1 1 1 1 1 0 1 1 1 0 1 28