Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01775 ATGGGCACGCCCTTTCACATTCCGGTCACTGCTGCTCAGGTGGGAACATACTTTGTTGGGCAGTACTATCAGGTTCTTCAGCAGCAACCTGACTATGTTTATCAGTTCTATTCTGATGCCAGTACTATGATCCGTATTGATGGCAATTTCAGAGAGACCGCCTCTGCAATGCTGCAAATACATGCACTTGTTATGTCGCTTAATTATACCGGGATTGAGATCAAGACTGCACATTCACTAGAATCATGGAATGGTGGTGTTCTTGTGATGGTTTCTGGCTCTGTTCAAATGAAGAATCTCAATCGAATGAGAAAGTTTGTGCAAACTTTTTTTCTTGCACCCCAAGAGAAAGGCTATTTTGTTCTGAATGATATCTTTCACTTTGTTGATGAGGAGCCAGTCCACCATTATCCAGCAGTCTTATTAAGTCAGAGCAATCTGGATTCCACCTTAAATGCTCCTACCACAGTTCCAGAGACAGTGCCCAATTACTCACTTAATGGAGCAGTCCAGGCGCGAGAGTTTTCCACCCCGGTTGTCAAAGAAAATGGTCACATCGATAACCATAAGTTTGTAGAGCAGCAAGTTGCAGAGCCGAAAAGCATTATTGAGGAAAATACAGCAGAAGTGAATTCTATGCATCAAAACACATCAACTGTTTCACAAGATCATTTTCCTGTTTCTGTTGAAGAACATGCTGAGGAGCCCCAAAAGCATACATATGCTTCAATTCTAAGAGTTGCTAAAGGGCAAGATGTTCCTGCCCCCATTGCTGCTCCCCAATATCCTGTTAGTAAGGGGACACCACCTGCTTCCGAGCAAAACTACACTCCACCTCCCACCAGTCAGCAAGTAACTTCAGCTCCCCAAAATAACTCTGAAAGGGAACAGATAGGAGGGGAGTTCCCTTCTATCGATGATGAAGGTGAAATAAAGTCTGTTTATGTAAGAAACTTGCCATCCACCGTGTCTGCTTCAGAAGTTGAGGAGGAATTCAAGCATTTTGGCAAACTCAGTTCTGATGGAGTGGTTATTAGGAGTCGCAAGGATGTTGGTTTTTGCTATGCGTTTGTCGAATTCGAAGACATCACTGGTGTCCAAAATGCCATCAAGGCAGGTACTGCCCAGGTTGCTGGGCGTCAAGTATACATTGAGGAGCGGAGAGCAAACAGCAACATCCCACACCGAGGAGGAAGAAGGGGTAGAGGAAGAGGGAGCTATCACACCGAGTCTTCAAAGGGACATTATAGTTCTCGTAGTTACAGTTACAGTATGGGAGTTCGAGATGGAAATGACCGTGAGTACATCAGACCGAGGGGCAATGGCTTCTATCGACCTACTACTCGACAGGAGAAAGGGAACGTAAGCCATCAAGTAACAGGAAATGGAGAAACTCCATCAGATTCATTATAG 1413 44.66 MGTPFHIPVTAAQVGTYFVGQYYQVLQQQPDYVYQFYSDASTMIRIDGNFRETASAMLQIHALVMSLNYTGIEIKTAHSLESWNGGVLVMVSGSVQMKNLNRMRKFVQTFFLAPQEKGYFVLNDIFHFVDEEPVHHYPAVLLSQSNLDSTLNAPTTVPETVPNYSLNGAVQAREFSTPVVKENGHIDNHKFVEQQVAEPKSIIEENTAEVNSMHQNTSTVSQDHFPVSVEEHAEEPQKHTYASILRVAKGQDVPAPIAAPQYPVSKGTPPASEQNYTPPPTSQQVTSAPQNNSEREQIGGEFPSIDDEGEIKSVYVRNLPSTVSASEVEEEFKHFGKLSSDGVVIRSRKDVGFCYAFVEFEDITGVQNAIKAGTAQVAGRQVYIEERRANSNIPHRGGRRGRGRGSYHTESSKGHYSSRSYSYSMGVRDGNDREYIRPRGNGFYRPTTRQEKGNVSHQVTGNGETPSDSL 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25062717 25066367 + Lsi05G017750.1 Lsi05g01775 664267

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01775 470 CDD RRM_SF 314 385 - -
Lsi05g01775 470 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 8 454 IPR039539 -
Lsi05g01775 470 Pfam Nuclear transport factor 2 (NTF2) domain 14 128 IPR002075 -
Lsi05g01775 470 Gene3D - 7 132 - -
Lsi05g01775 470 SMART rrm1_1 313 385 IPR000504 GO:0003723
Lsi05g01775 470 MobiDBLite consensus disorder prediction 391 470 - -
Lsi05g01775 470 Gene3D - 263 407 IPR012677 -
Lsi05g01775 470 SUPERFAMILY NTF2-like 10 129 IPR032710 -
Lsi05g01775 470 MobiDBLite consensus disorder prediction 410 425 - -
Lsi05g01775 470 PANTHER OS02G0131700 PROTEIN 8 454 - -
Lsi05g01775 470 MobiDBLite consensus disorder prediction 447 470 - -
Lsi05g01775 470 MobiDBLite consensus disorder prediction 267 298 - -
Lsi05g01775 470 ProSiteProfiles Nuclear transport factor 2 domain profile. 14 128 IPR018222 -
Lsi05g01775 470 SUPERFAMILY RNA-binding domain, RBD 310 416 IPR035979 GO:0003676
Lsi05g01775 470 MobiDBLite consensus disorder prediction 256 309 - -
Lsi05g01775 470 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 389 IPR000504 GO:0003723
Lsi05g01775 470 CDD NTF2 10 130 IPR018222 -
Lsi05g01775 470 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 381 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01775 - - - csv:101202971 879.782
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01409 Lsi-Chr6:24666177 Lsi05g01775 Lsi-Chr5:25062717 3.91E-56 transposed
Lsi05g01775 Lsi-Chr5:25062717 Lsi09g01797 Lsi-Chr9:26711517 5.84E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g785 . . . . . Bpe14g01284 . . . . Cma06g01289 Cma14g01845 Car06g01107 Car14g01653 . Cpe08g00362 Cpe03g01545 . . . . . . . . . . . . . . . . Cone7ag0352 Cone4ag0365 Lsi05g01775 . . . Blo02g00687 . . Bda13g00036 . . . . . Cmo06g01295 Cmo14g01889 . . . . . . . . . . . . . Cla05g00405 Cam05g0442 Cec05g0449 Cco05g0450 Clacu05g0439 Cmu05g0417 Cre05g0479 . Csa03g01165 Chy06g00427 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007215 1 4 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37