Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01776 ATGTTGCACTCCACGGCTTCGTTTTCCATATACACTGATGATGAAAATCAAGAACAAGTCATGGGTTTAGAAGCATTTGAGAAGGGGATTATGATTGAAGTGAACAAAGAAGCTCTGGGTAGTAGTGGTAATGATTTCAGTTTTTCTAAAAGGGCTATGGGGTTGATTCAAGAGGAAGAAATGGAAGATGAAGATGGCCTCAACTCGATTTCGAATCTGGGTTTTGACGACGGCGAGGTTAACCTGAGACCAGCCAGTCCTCCGCTCTATTTAGCGGCGGGGCTTGGAATGGATGTCTCTGGTCTTGGTGGTGGGTATGATTCTGTTGATTTCTTTGACGAAAAGATGGTGGATGAGCCGCCCTCAATCCGTCCGTCGTTGCTTCTGAGGAACTATGTGCAGTCTTTATGGTCCGAGGGAAAACTTGATGAAGCTGAGGAACAGTGCTATCAAGCTACATTGACATACCCTGAAGATGGTGAAACTTTGATGCTGTATGCTCAGTTGGTTTGGGAAGTCCATCACGATCAAGCTAAGGCCTCAAGTTACTTTGAACGTGCAGCTCTTATTGCTCCAAATAACAGCGATATTCTTGCAGCACGAGCTAAATTTCTGTGGGAACTGAATGAGGAGGATGAAACTATGGTGCTGTCACTCTTCCCTGCATAG 669 45.14 MLHSTASFSIYTDDENQEQVMGLEAFEKGIMIEVNKEALGSSGNDFSFSKRAMGLIQEEEMEDEDGLNSISNLGFDDGEVNLRPASPPLYLAAGLGMDVSGLGGGYDSVDFFDEKMVDEPPSIRPSLLLRNYVQSLWSEGKLDEAEEQCYQATLTYPEDGETLMLYAQLVWEVHHDQAKASSYFERAALIAPNNSDILAARAKFLWELNEEDETMVLSLFPA 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25066456 25069245 - Lsi05G017760.1 Lsi05g01776 664268

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01776 222 SUPERFAMILY TPR-like 128 213 IPR011990 GO:0005515
Lsi05g01776 222 PANTHER N-ACETYLGLUCOSAMINE TRANSFERASE, OGT PROTEIN, PUTATIVE-RELATED 115 214 - -
Lsi05g01776 222 PANTHER N-ACETYLGLUCOSAMINE TRANSFERASE, OGT PROTEIN, PUTATIVE-RELATED 1 112 - -
Lsi05g01776 222 Gene3D Tetratricopeptide repeat domain 117 217 IPR011990 GO:0005515
Lsi05g01776 222 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 1 112 - -
Lsi05g01776 222 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 115 214 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01776 - - - bhj:120092966 398.282
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01776 Lsi-Chr5:25066456 Lsi06g00978 Lsi-Chr6:19769044 8.94E-18 dispersed
Lsi05g01776 Lsi-Chr5:25066456 Lsi09g01798 Lsi-Chr9:26733460 9.15E-17 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g786 . . . . . . . . . . . Cma14g01846 . Car14g01654 . . Cpe03g01546 . . . . . . . . . . . . . . . . Cone7ag0353 . Lsi05g01776 . . Cme06g00446 Blo02g00686 . . . . . . . . . Cmo14g01890 . . . . . . . . . . . . . Cla05g00404 Cam05g0441 Cec05g0448 Cco05g0449 Clacu05g0438 Cmu05g0416 Cre05g0478 . Csa03g01164 Chy06g00426 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009424 0 1 3 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 2 33