Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01777 ATGGAACCACCTCTAGCTTTACTGGGTAGCAGCTGCATTGCCAGCGCCGGCGGCTCTTCCGGAGCCTCCAACGATGAGAATTCGGTTTCCAAGGCTAAGGAGTTCAACAACCACCAGACGGATTTGTCATCCGAGGAGTTTTCTTCCCCTGTTGAGGCTGAACTCGAATTAGGGTTAGGGCTCAGTCTTGGAAATGGGGTTTCTGCCGGAAAGGGTAAGCACGGTGTCTGGGGTGAGCGCGGCCGGATATTGACAGCGAAAGATTTTCCCTCGGCCATCTCTCCTGGTGGGTCTTCTTCTTCTTCTTCTTCGGCTAGATTCTCTGGCAGACCTGCTGCTGTTTCTGGTGTCAAGAGGGCGGCGGAACCTGCTTCCCACGACGGCGGTTCTCCTCCTCCAGCTGTCAGTCAGGTGGTGGGATGGCCGCCCTTAAGAGCTTACAGAATCAACAGCCTGGTTAACCAAGCTAAAAATCAAAGGGCTGGAGATGAAAAGGAGCTGCTTTCTCTCAAGAATAGGTCCAATGGTGTTTCAGAGAAGATCCACGATGGCAAAAATACGAGTGCCACTGATACTGAAAAGAGGCCTCTAGGTTTTGTGAAAGTGTATATGGACGGAGTTCTAATTGGCAGGAAAGTGGATTTGAATGCCCATTCTTGCTATGAGACTTTGGCACTGATGCTCGAGGATATGTTTTTTAAGTCTGCAGGAAGCGTCCCATCCACTGGCTTAAGTGGAGGTCAGGATGAACAAGCACCAAAACTCTCAAAACTTCTGACTGGCTCCTCTGAGTTTGTGCTCACCTATGAAGATAAAGAGGGAGACTGGTTGTTGGTTGGGGATGTTCCTTGGAGGATGTTCCTTGGCTCGGTTAAGAAACTTCGAATCATGAGGACATCTGAGGCAAAGGGACTCGGTAGAAAATATTCAAGAGGAAGCATCAAAGCTGCTAAGAAGGTTAAGGATATTAATAATGTCCAAGACGATAAGTTCCTTTCTCACATTTTATGGTGGAAAGAGATGGTGGAATCATGCAAGAAGCCGTCATCTGTCCAGCTGGTTAAGAGGCTTGACTTTTCCAATTTGCTAGGTTTAGATATTAACCTGAAAAATGGGAGTCTTAAAGATGGAACTCTTAACTGTGAGATTCTACAATTCAAGGCAAAGTTTCCTCGAGAAGTTTTGCTCTGTAGAGTCGGAGATTTTTATGAAGCAATTGGAATAGATGCTTGCATACTTGTAGAATACGCTGGTTTAAATCCTTTTGGAGGTCAACGAATGGATAGTATTCCAAAAGCTGGCTGCCCTGTTGTGAATCTTCGTCAAACTTTGGATGATCTGACACGTAATGGGTTCTCAGTGTGCATAGTGGAAGAAGTTCAGGGCCCAATGCAAGCTCGTTCTCGCAAAGGACGTTTTATATCTGGGCATGCACACCCAGGCAGTCCTTATGTCTTTGGGCTCGTTGGGGTTGATCACGATCTTGACTTTCCAGAACCAATGCCTGTGGTTGGAATATCTCGATCTGCAAGGGGATATTGCATAAACCTTGTCATAGAGACCATGAAGACATATTCATCAGAGGATGGTTTGACAGAAGAGGCCTTGGTTACTAAACTGCGCACTTGTCAATACCATCATTTATTTCTTCACACTTCATTAAGGAACAACTCCTCAGAAGATGCTTGGAAGAAGTATGCTGCTGTATTTATGCCATATAAGAAATTTGTTGTGTGTGTACTGTGTAGCACAATTCTGATTAAAGGCACTTGTCGTTGGGGTGAATTTGGTGAGGGTGGACGGCTGTGGGGGGAATGTAATTCCAGACATTTTGAGTGGTTCGATGGAAATCCTCTTGATAATCTTTTGTCTAAGGTTAAAGAGCTTTATGGTCTTGATGATAAAGTTACATTTAGGAATATAACAATATCGTCAGAGAATAGGCCACATCCATTAACACTAGGAACCGCAACACAGATTGGTGCCATACCAACAGAGGGAATACCTTGTTTGTTGAAGGTGTTGCTTCCATCAAATTGTGCTGGCCTTCCTGCATTGTATATTAGGGATCTTCTTCTCAATCCTCCTGCTTATGAGACTGCGACCACTATTCAAGCAACATGCAGGCTTATGAGCAATGTCACATGTGCAATTCCAGACTTCACTTGCTTTCCGCCGGCCAAGCTTGTGAAGTTATTGGAAATGAGGGAGGCCAATCATATTGAATTCTGTAGAATGAAGAATGTACTTGACGAAATATTACACATGCATAAAAATTGTGAGTTAAACAATATCCTGAAATTGTTGATGGATCCTGCATCTGTGGCAACTGGGTTGATAATTGACTATGATACATTTGTCAACGAATGTGAATGGGCTTCCAGTAGAGTTGACGAAATGATTTTTCTTGGTAGTGAAAGTGAAAGTGACCAGAAAATCAGTTCTTATCCTATCATTCCTAATGATTTTTTCGAGGATATGGAATCTTCTTGGAAAGGTCGTGTGAAGAGGATTCACATTGAAGAATCATGTACAGAAGTTGAAAGGGCAGCTGAAGCACTCTCCCTTGCAGTTACTGAAGATTTCGTCCCAATCATTTCGAGAATCAAGGCTACTACTGCACCACTAGGAGGTCCAAAGGGAGAAATATTGTATGCTCGGGAGCATCAATCTGTCTGGTTCAAAGGAAGACGGTTTGCACCAGCTGTATGGGCTGGAAGCCCTGGAGAAGAAGAAATTAAACAATTGAAACCTGCTCTTGATTCAAAGGGGAAAAAGGTTGGGGAGGAGTGGTTTACCACGAAGAAGGTGGAGGATGCTTTAACAAGGCATGTGGGCATAAAATCATTGGAGGGGAAAGTTGGGATGAAGCTGGTTGGACTATCTCCCTATTGGTTTGATGTGGTAGAAGGCAATGCTGTGCAGAATACTATTGAGATGGAATCGTTATTTCTTTTGACTGGTCCAAATGGGGGTGGAAAATCCAGTTTGCTTCGATCCATTTGTGCTGCTGCTTTGCTTGGGATATGTGGATTTATGGTGCCAGCAGAGTCTGCCCTGATTCCCCACTTCGACTCAATTATGCTTCATATGAAATCTTTTGATAGTCCTGCTGATGGAAAAAGTTCGTTTCAGGTGGAAATGTCGGAGATGAGATCGATCATCAGCAGAGTTACAGAAAGAAGTCTTGTACTTATAGATGAAATCTGTCGCGGAACAGAAACAGCAAAAGGAACTTGTATTGCTGGGAGCATTATTGAAGGTCTTGATAAAGTAGGTTGTCTTGGTATTGTCTCCACTCACTTGCATGGAATATTCAATTTGCCTTTAGATACCAAAAACACTGTGTACAAAGCAATGGGAACCGTTTCTGCTGATGGACGAACGGTTCCCACTTGGAAGTTGATTAATGGAATATGTAGAGAGAGCCTTGCCTTTGAAACAGCAAAGAATGAAGGGATCTCTGAAGCTATAATTCAAAGGGCTGAGGATTTGTATCTCTCAAATTATGCTGAAGTAGGGATTTCAGGAAAAGAGAAGATAGATTTGAACTTTTTTGTTTCTTCTCATGCAAGCCTTAATGGCAATGGCAAATCCCATCTTAAGTCAAATGGTGTTATAGTAGAAGCTGATCAGCCAAAAACAGAGACAACTAGCAAAGCAGGTGTCTTGTGGAAGAAAATTGAGGGGGCTATCACTGCAATATGCCAAAAGAAGCTGCTAGAGTTTCACAAAGATAAAAACACATTGAAACCTGCACAAATTCAATGTGTTCTAATTGATGCCAGAGAGAAACCACCTCCATCAACAATAGGTGCTTCGAGTGTGTACGTGATTCTTAGACCGGATGGTAAATTCTACGTCGGACAGACTGATGATCTGGAGGGTCGAGTCCATTCTCATCGTTTAAAGGAAGGAATGCGGGACGCCGCATTCCTTTATTTTACAGTCCCTGGGAAGAGCTTGGCTTGCCAACTTGAAACTCTTCTCATCAATCGACTTCCTGATCATGGCTTCCAGCTAACTAATGTTGCTGATGGAAAGCACCGGAATTTCGGCACGTCCAATCTCTTATCAGATAATGTGACTGTTTGTTCGTAA 4101 43.53 MEPPLALLGSSCIASAGGSSGASNDENSVSKAKEFNNHQTDLSSEEFSSPVEAELELGLGLSLGNGVSAGKGKHGVWGERGRILTAKDFPSAISPGGSSSSSSSARFSGRPAAVSGVKRAAEPASHDGGSPPPAVSQVVGWPPLRAYRINSLVNQAKNQRAGDEKELLSLKNRSNGVSEKIHDGKNTSATDTEKRPLGFVKVYMDGVLIGRKVDLNAHSCYETLALMLEDMFFKSAGSVPSTGLSGGQDEQAPKLSKLLTGSSEFVLTYEDKEGDWLLVGDVPWRMFLGSVKKLRIMRTSEAKGLGRKYSRGSIKAAKKVKDINNVQDDKFLSHILWWKEMVESCKKPSSVQLVKRLDFSNLLGLDINLKNGSLKDGTLNCEILQFKAKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGQRMDSIPKAGCPVVNLRQTLDDLTRNGFSVCIVEEVQGPMQARSRKGRFISGHAHPGSPYVFGLVGVDHDLDFPEPMPVVGISRSARGYCINLVIETMKTYSSEDGLTEEALVTKLRTCQYHHLFLHTSLRNNSSEDAWKKYAAVFMPYKKFVVCVLCSTILIKGTCRWGEFGEGGRLWGECNSRHFEWFDGNPLDNLLSKVKELYGLDDKVTFRNITISSENRPHPLTLGTATQIGAIPTEGIPCLLKVLLPSNCAGLPALYIRDLLLNPPAYETATTIQATCRLMSNVTCAIPDFTCFPPAKLVKLLEMREANHIEFCRMKNVLDEILHMHKNCELNNILKLLMDPASVATGLIIDYDTFVNECEWASSRVDEMIFLGSESESDQKISSYPIIPNDFFEDMESSWKGRVKRIHIEESCTEVERAAEALSLAVTEDFVPIISRIKATTAPLGGPKGEILYAREHQSVWFKGRRFAPAVWAGSPGEEEIKQLKPALDSKGKKVGEEWFTTKKVEDALTRHVGIKSLEGKVGMKLVGLSPYWFDVVEGNAVQNTIEMESLFLLTGPNGGGKSSLLRSICAAALLGICGFMVPAESALIPHFDSIMLHMKSFDSPADGKSSFQVEMSEMRSIISRVTERSLVLIDEICRGTETAKGTCIAGSIIEGLDKVGCLGIVSTHLHGIFNLPLDTKNTVYKAMGTVSADGRTVPTWKLINGICRESLAFETAKNEGISEAIIQRAEDLYLSNYAEVGISGKEKIDLNFFVSSHASLNGNGKSHLKSNGVIVEADQPKTETTSKAGVLWKKIEGAITAICQKKLLEFHKDKNTLKPAQIQCVLIDAREKPPPSTIGASSVYVILRPDGKFYVGQTDDLEGRVHSHRLKEGMRDAAFLYFTVPGKSLACQLETLLINRLPDHGFQLTNVADGKHRNFGTSNLLSDNVTVCS 1366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25073377 25096293 + Lsi05G017770.1 Lsi05g01777 664269

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01777 1366 SUPERFAMILY GIY-YIG endonuclease 1274 1337 IPR035901 -
Lsi05g01777 1366 PANTHER DNA MISMATCH REPAIR PROTEIN MSH1, MITOCHONDRIAL 950 1316 - -
Lsi05g01777 1366 PANTHER DNA MISMATCH REPAIR PROTEIN MSH1, MITOCHONDRIAL 589 944 - -
Lsi05g01777 1366 PANTHER DNA MISMATCH REPAIR PROTEIN MSH1, MITOCHONDRIAL 421 563 - -
Lsi05g01777 1366 ProSitePatterns DNA mismatch repair proteins mutS family signature. 1062 1078 IPR000432 GO:0005524|GO:0006298|GO:0030983
Lsi05g01777 1366 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 972 1165 IPR027417 -
Lsi05g01777 1366 SUPERFAMILY DNA repair protein MutS, domain I 373 482 IPR016151 GO:0005524|GO:0006298|GO:0030983
Lsi05g01777 1366 ProSiteProfiles PB1 domain profile. 197 301 IPR000270 GO:0005515
Lsi05g01777 1366 Pfam MutS domain V 985 1165 IPR000432 GO:0005524|GO:0006298|GO:0030983
Lsi05g01777 1366 Gene3D DNA repair protein MutS, domain I 370 478 IPR016151 GO:0005524|GO:0006298|GO:0030983
Lsi05g01777 1366 SUPERFAMILY CAD & PB1 domains 198 297 - -
Lsi05g01777 1366 MobiDBLite consensus disorder prediction 15 49 - -
Lsi05g01777 1366 MobiDBLite consensus disorder prediction 92 109 - -
Lsi05g01777 1366 Gene3D - 192 311 - -
Lsi05g01777 1366 Gene3D - 959 1200 IPR027417 -
Lsi05g01777 1366 SMART mutATP5 981 1167 IPR000432 GO:0005524|GO:0006298|GO:0030983
Lsi05g01777 1366 MobiDBLite consensus disorder prediction 88 137 - -
Lsi05g01777 1366 Pfam MutS domain I 384 473 IPR007695 GO:0005524|GO:0006298|GO:0030983
Lsi05g01777 1366 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 950 1316 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Lsi05g01777 1366 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 589 944 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Lsi05g01777 1366 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 421 563 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Lsi05g01777 1366 MobiDBLite consensus disorder prediction 15 47 - -
Lsi05g01777 1366 Coils Coil 153 173 - -
Lsi05g01777 1366 CDD ABC_MutS_homologs 971 1154 - -
Lsi05g01777 1366 Pfam AUX/IAA family 93 306 IPR033389 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01777 - - - twl:119998293 1428.31
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi05g01777 Lsi09g01192 CCT
Lsi05g01777 Lsi09g01192 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01236 Lsi-Chr5:20213692 Lsi05g01777 Lsi-Chr5:25073377 3.54E-21 dispersed
Lsi05g01777 Lsi-Chr5:25073377 Lsi08g01048 Lsi-Chr8:19070604 9.95E-32 dispersed
Lsi07g00331 Lsi-Chr7:3499196 Lsi05g01777 Lsi-Chr5:25073377 2.87E-13 dispersed
Lsi10g00833 Lsi-Chr10:11770391 Lsi05g01777 Lsi-Chr5:25073377 3.44E-08 dispersed
Lsi11g00267 Lsi-Chr11:2690267 Lsi05g01777 Lsi-Chr5:25073377 1.98E-16 dispersed
Lsi02g00744 Lsi-Chr2:6831709 Lsi05g01777 Lsi-Chr5:25073377 9.29E-16 transposed
Lsi05g01052 Lsi-Chr5:18042116 Lsi05g01777 Lsi-Chr5:25073377 2.68E-48 wgd
Lsi05g01777 Lsi-Chr5:25073377 Lsi09g01192 Lsi-Chr9:19160403 3.54E-78 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g788 Blo01g00304 . . Bda08g00002 . Bpe14g01286 . Bma05g01256 . Cmo17g00135 . Cma14g01847 . Car14g01655 . . Cpe03g01547 . . . . . . . Cla06g00701 Cam06g0752 Cec06g0758 Cco06g0770 Clacu06g0743 Cmu06g0726 Cre06g1503 Cone14ag0184 Cone15ag0193 . . Lsi05g01777 Csa02g01024 Chy05g00286 Cme06g00445 . . . Bda13g00034 . . Bma02g00747 . . . Cmo14g01891 . Cma17g00132 . Car17g00118 Cpe12g00116 . . . . . . . . Cla05g00403 Cam05g0439 Cec05g0447 Cco05g0447 Clacu05g0436 Cmu05g0415 Cre05g0477 Lsi09g01192 Csa03g01162 Chy06g00425 Cme05g00622
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010615 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25409 PF02309 AUX_IAA 3.00E-56 CL0072 Lsi TR