Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01778 ATGGGAGGAGGGCGGACGTCGACGGCACCTTCCAGAAAGGTAATGGTGGTGGTAGATCCTACCCGAGAGTCCGCCGCTGCGCTACAATATGCGCTTTCACATGCTGTCATTGAGAATGACCAGGTAATTCTCCTCCATGTCGATAACCCTAATTCTTGGAGGAACGCTATTTCTACGTTCCTCAAGAGGCCTAATGGTGGATCTGGTAACAACAACAATAATAATAATAATAATAATAATAATAATCATAATGCTCATGCTCATGCCGCTGCCACTGCGACCGCCGCCTCCGATGGCGGACAAGGAGGAGGAGGAGGACCGACGGCGGAAGTGGATTTTCTTGAGGAGATGAAAAAGGCCTGCAAGATTGCTCATCCGAAACTGAAAGTGGGGACGCTGAGAGTTGAATTGGAAGGCAAAGACAAAGCCTCCATGATTATGGCTCAAACCAAGGCTCTCGGTATTGATCTGCTAGTCATAGGGCAGAGGCGAAGTCTCTCCACAGCAATCTTAGGATATAGAAGGACAGGAGGGGCAATGAAAGGGGCAAAAATGTTGGACACAGCAGAGTATTTGATTGAGAACAGCAAATGCACTTGTGTTGCTGTACAAAAGAAGGGTCAAAATGCAGGCTATCTTTTGAACACCAAAACCCACAGAAACTTCTGGCTCTTGGCTTGA 681 47.58 MGGGRTSTAPSRKVMVVVDPTRESAAALQYALSHAVIENDQVILLHVDNPNSWRNAISTFLKRPNGGSGNNNNNNNNNNNNNHNAHAHAAATATAASDGGQGGGGGPTAEVDFLEEMKKACKIAHPKLKVGTLRVELEGKDKASMIMAQTKALGIDLLVIGQRRSLSTAILGYRRTGGAMKGAKMLDTAEYLIENSKCTCVAVQKKGQNAGYLLNTKTHRNFWLLA 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25097068 25099764 - Lsi05G017780.1 Lsi05g01778 664270

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01778 226 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 2 226 - -
Lsi05g01778 226 Pfam Universal stress protein family 12 53 IPR006016 -
Lsi05g01778 226 Pfam Universal stress protein family 107 203 IPR006016 -
Lsi05g01778 226 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 2 226 - -
Lsi05g01778 226 CDD USP_Like 13 203 - -
Lsi05g01778 226 Gene3D HUPs 11 211 IPR014729 -
Lsi05g01778 226 MobiDBLite consensus disorder prediction 64 109 - -
Lsi05g01778 226 MobiDBLite consensus disorder prediction 64 88 - -
Lsi05g01778 226 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 12 204 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01778 - - - csv:101222608 355.525
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00353 Lsi-Chr4:3515932 Lsi05g01778 Lsi-Chr5:25097068 2.64E-21 dispersed
Lsi05g01778 Lsi-Chr5:25097068 Lsi06g01395 Lsi-Chr6:24522479 4.97E-06 dispersed
Lsi05g01778 Lsi-Chr5:25097068 Lsi02g00139 Lsi-Chr2:1157903 1.03E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g795 . . . . . . . . . . Cma06g01288 Cma14g01848 Car06g01106 Car14g01657 Sed02g1426 Cpe08g00363 Cpe03g01549 Bhi01g00662 Tan10g0615 Cmetu06g1762 . . . . . . . . . . . Cone14ag0186 . . . Lsi05g01778 . . Cme06g00443 . . Bda11g00651 . . . . Bma06g01619 . Cmo06g01294 Cmo14g01894 . . . . . . . . . . . . . Cla05g00402 Cam05g0438 Cec05g0445 Cco05g0445 Clacu05g0434 Cmu05g0414 Cre05g0476 . Csa03g01160 Chy06g00423 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008857 1 1 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 2 1 34