Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01783 ATGGATTCAGGGTTCTGCGCCGCCCATCTCTCTCAGCTCCTCGGCCCCAACACCACTAACGCCACCGCCGCCGCTAATTTCATCTGCGACCAATTCACCACCGTCACCAACAACTTCTCCGACACCAAAAATGCGCTCGACAACACCTACCTCCTCTTCTCCGCCTACCTCGTCTTCTCTATGCAACTCGGCTTCGCCATGCTCTGTGCCGGCTCCGTCCGCGCCAAAAACACCATGAACATCATGCTCACCAATGTCCTCGACGCCGCTGCCGGCGGCCTCTTCTATTACCTTTTCGGCTACGCCTTCGCCTTCGGTTCCCCTTCCAATGGCTTCATCGGCCGCCATAACTTCGGTCTCACCTCCTTCCCGACCTCCACTGCCGATTACAGCTTTTTCCTTTACCAGTGGGCCTTTGCGATCGCTGCCGCCGGGATTACCAGTGGATCTATTGCCGAGCGGACTCAGTTCGTCGCCTATTTGATTTATTCCTCTGTTTTGACTGGATTCGTTTATCCGGTGGTTTCTCACTGGTTCTGGTCGCCCGATGGTTGGGCTGGGGTTATGAAATCGGATGGCGGACTGTTGTTCGGATCGGGAGTTATCGACTTCGCCGGCTCCGGCGTTGTTCATATGGTTGGGGGAATTGCTGGTCTATGGGGCGCGTTGATCGAGGGGCCGAGAATCGGTCGATTCGACCACACCGGCCGGTCGGTGGCTCTGCGAGGGCACAGCGCTTCTTTAGTCGTTCTCGGAACTTTCATGCTCTGGTTCGGATGGTACGGTTTCAATCCAGGTTCGTTCGCGAAGATTCTCGTCCCTTACACCACCGGAAACTTCTACGGCCAGTGGAGCGCCGTCGGACGGACGGCGGTTACCACCACGCTCGCGGGATGCACGGCGGCACTCACCACGCTCTTCGGGAAGCGATTCCTCTCAGGCCACTGGAACGTGACGGACGTTTGTAACGGACTGCTCGGCGGCTTCGCCGCCATCACTGCCGGCTGTTCCGTCGTCGAGCCATGGGCAGCAATCATCTGCGGCTTCGTCGCCGCCCTCGTGCTAATAACCTGCAACCGAATCGCGGAGAAAGCGAAATACGACGATCCATTAGAAGCCGCTCAACTCCACGGCGGGTGCGGCGCGTGGGGAGTGATATTCACGGCACTCTTCGCAACGAAGGAGTACGTAACAGAAGTGTATGGCGGATCGGGGCGGCCGTATGGTCTTCTGATGGGCGGCGGCGGGAGGTTATTGGCAGCGCATTTGATACAGATTTTGGTGATTGTGGGGTGGGTGAGTGCAACGATGGGGCCATTGTTCTTTGTTCTTCACAAATTAAAGCTTCTGAGAATCTCCACTGAAGATGAAATGGCGGGGATGGATCTGACCCGCCATGGCGGATTTGCTTACATATATCATGATGAAGACGAAGCCCAGAAAATGGGTATTCAGTTGAACAGAGTAGAACCAAAATCTGCAACTCCTACTGGAGATTATTGA 1503 56.02 MDSGFCAAHLSQLLGPNTTNATAAANFICDQFTTVTNNFSDTKNALDNTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGYAFAFGSPSNGFIGRHNFGLTSFPTSTADYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGFVYPVVSHWFWSPDGWAGVMKSDGGLLFGSGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDHTGRSVALRGHSASLVVLGTFMLWFGWYGFNPGSFAKILVPYTTGNFYGQWSAVGRTAVTTTLAGCTAALTTLFGKRFLSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIICGFVAALVLITCNRIAEKAKYDDPLEAAQLHGGCGAWGVIFTALFATKEYVTEVYGGSGRPYGLLMGGGGRLLAAHLIQILVIVGWVSATMGPLFFVLHKLKLLRISTEDEMAGMDLTRHGGFAYIYHDEDEAQKMGIQLNRVEPKSATPTGDY 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25159224 25160726 + Lsi05G017830.1 Lsi05g01783 664275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01783 500 PANTHER AMMONIUM TRANSPORTER 1 MEMBER 1 6 494 - -
Lsi05g01783 500 Pfam Ammonium Transporter Family 50 471 IPR024041 GO:0008519|GO:0016020|GO:0072488
Lsi05g01783 500 PANTHER AMMONIUM TRANSPORTER 6 494 - -
Lsi05g01783 500 SUPERFAMILY Ammonium transporter 44 452 - -
Lsi05g01783 500 ProSitePatterns Ammonium transporters signature. 203 228 IPR018047 GO:0008519|GO:0016020|GO:0072488
Lsi05g01783 500 Gene3D Ammonium transporter AmtB like domains 25 490 IPR029020 -
Lsi05g01783 500 TIGRFAM amt: ammonium transporter 47 471 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01783 Lsi-Chr5:25159224 Lsi09g01170 Lsi-Chr9:18944306 0 dispersed
Lsi05g01060 Lsi-Chr5:18115979 Lsi05g01783 Lsi-Chr5:25159224 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01783 K03320 - csv:101208366 914.45