Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01786 ATGATAAATATTGTTGGGGGCGTTACATTTCAGTTTAGATGTAGCAACTTTATTCGACAAAATCCCGAACGACACCCGCTTCCTACCCGCCGGAACAATTCTCAATTCTCTTCTCTCTTCTCCCCCCAAAACCTTCTCTTCCAATCCCGCAGCACTCGCCGGAGCAACACCATTTCCGCCGACGGCACACCTTTCTTTCACCGCCACCCCCTCTCTCATTGCCATTGCCATTGCCATTGCCATTGCCATTGCCATTTCCTCATCAATGTCGGCTCATTAGCTTCCAAACTCCAACCCTCCCGACACTTCAACCTCCATTCCTCCTCAATCCATCAATATTCCTCCACTGAGCACAACGAAACTCTTCTCCTTCAATCCTCTCATAACCCCTTATTCATGGTTTTTCGAACGAACGACAATGCCGGACCTAGCAGAGCTCACCCTTTTCCATCTGCATTCGGTTCTGAACCCTGCGTTTCGCTTGGGATTCGCTACCTCGACCTTGGATCTGTGGCTGATCGAATTTCCCCCACAATGGCTGGTCAAGTAAATGTAGCGGTTGGGTCTCTTGTTTGGATTGAGGATCCTGAGGTAGCCTGGCTAGATGGGGAAGTTGTGGAAGTTAATGGTCAAGATATCAAAGTACTTTGTACATCAGGAGCTACTGTAAGTGATACTTCGCAGGATGTTACATTTGATTTGCTGTGTTTAACTGTTAGATACTGTTGGCTGGTTGAGGTCAAATCATCAAATGTCTATCCGAAGGATCCTGAATTTCCGTCATGTGGTGTAGATGATATGACAAAACTAGCTTATTTGCATGAGCCGGGGCTTCTACAGAACTTAAAATCTCGTTATGATGTTAATGAAATTTATGTGAGTCACTACTCTTTCCTCCTTATTGGAGAAAATTCATTCCTCGGGTGTGAGCTTTTGACCTATACTGGAAGTATACTAATAGCCGTAAATCCTTTTCGAAGACTTCCTCATTTATATGATAACCACATGATGCAACAATATAAAGGTGCAGCTTTAGGTGAGCTGAGCCCGCATCCCTTTGCCATTGCAAATTCTGCTTATAGACAGATGATTAATGAAAGTATCAGCCAGTCAATTTTAGTTAGTGGGGAAAGTGGTGCTGGTAAAACGGAGAGTACAAAGATGCTTATGCGCTATCTTGCCTATGTTGGAGGGAGAGCTGGAGGGAAGGCTGCAACTGGTGAACGTTCTGTAGAGCAGCAAGTACTAGAGTCCAACCCTGTTCTAGAAGCATTTGGCAATGCAAAGACTGTTAGAAACAATAATTCAAGCCGGTTTGGTAAATTTGTGGAGATCCAATTTGATCAGAGTTGGAGAATTTCTGGAGCTGCTATTAGAACTTATTTATTAGAACGTTCCCGTGTTTGCCAAGTGTCTGATCCCGAGAGGAATTATCATTGCTTCTATATGCTTTGTGCTGCACCAACAGAGGAAATTGAAAAGTACAAATTAGGGAATCCAAGAACATTTCATTATCTTAATCAATCTAATTGCTACGAACTTGATGGAGTGGATGATTCCAAGGAATATCTTTCTACTAGGAAAGCTATGGATGTTGTTGGAATAAGTACAACTGAGCAGGATGCAATATTTCGAGTGGTAGCTGCGGTACTTCATTTGGGCAACGTTGAATTTGCAAAGGGGAAGGACGTAGATTCCTCTGAACCGAAGGATGACAAAGCTCGGTTCCATCTCAAAATGTCAGCAGAACTATTCATGTGTGATGAGAAGGCTCTTGAAGATTCAATGTGTACTCGTGTGATAGTTACACGTGATGAAACCATAACTAAATGTCTCGATTCAGACTCTGCATCTCTTAGTAGGGATGCTTTAGCAAAGATTGTTTATTCAAGATTATTTGATTGGATTGTTGATAAGATTAATAACTCAATTGGCCAAGATCCTCATTCAAAGAACTTAATTGGGGTTCTGGATATCTATGGATTCGAGAGTTTCAAGACAAACAGCTTTGAGCAATTCTGTATTAACCTGACCAATGAGAAATTGCAGCAACATTTCAACCAGCATGTGTTCAAGATGGAGCAAGAAGAATATACAAAAGAAGAAATTGACTGGAGTTATATTGAATTTATTGATAATCAGGATATTCTTGATCTCATTGAGAAGAAACCTGGTGGCGTCCTTGCTCTTCTGGATGAGGCTTGCATGTTTCCGAGATCCACACATGATACTTTTGCGCAGAAACTATATCAAACGTTTAAGGACCATAAGCGTTTTAGTAAGCCTAAATTGTCACGAACTGACTTCACAATTTGTCATTATGCTGGTGATGTTACGTACCAAACTGAACTCTTCTTGGACAAAAACAAAGATTATGTTGTTGCAGAGCATCAAGCACTGTTGAGTGCTTCTAAGTGCCCCTTTGTTTCAGGGCTTTTCCCCCCCTTACCTGAAGAAACCTCCAAATCATCCAAGTTCTCATCAATAGGGACTCGATTTAAGCAACAACTTCAATCTTTGCTTGAGACACTAAATGCTACTGAGCCACACTACATACGCTGTGTAAAGCCAAACAATCTTCTTAAACCAGCCATCTTTGAGAACAATAATGTTTTACAGCAGCTCCGATGTGGGGGAGTCATGGAAGCAATCAGGATCAGTTGTGCTGGATATCCCACTAGGAAGACGTATGATGAATTTATTGAAGCTCTGTGTAATTCTCTTTTCACTGGACTTGTTGATAGCTGTAATGAAGCCACTGCGTGTAAGAGGCTTTTGGAGAAAGTGAACCTTAAAGGGTATCAGATTGGTAAAACGAAAGTGTTTCTCAGGGCTGGTCAAATGGCAGAATTAGATGCTTGCCGAACTGAGGTTTTGGGAAGATCTGCTATTGTTATCCAAAGGAAAGTTCGCTCATATTTGGGGCGTAGAAACTTTATTTTGTTGCGGTTGGCTGCTATACAAATTCAAGCCCTGTGTAGAGGGCATATTGCACGCCAGCATTATGAAGACATCAGAATGGAAGCTGCTTCTATCAAAATCCAAAAGTATTGGCGTATGCATTTTGCCCGATGTTGCTATAAAAGATTGTGCTCTTCAGCTGTAGCTATTCAAGCTGGTATCCATGGTATGGTTGCTCGTAAAGAGCTTAAGTTCAGGAGGCAGACAAGAGCTGCTATTATCATTCAGTGGTGTCCAGTAAACATGGTAGAAAGGAGGTCCCAGATGTCTTTTTGCAATGGAAATGTGCCAACTGCCAACCAAAGGCTTCCAGAAAGTGGTTCTAAAGATCTTTGGTGGGAGAGCAGGGAGATAGCATATATAGTGGGGAAAGTGTCTTTTAGGTGCCCCATTCCCCAACCACATATCAGACCAAAGAAGAGTATTGTCACGCCTCCCCACTTTGCAATTTATGTGTTGAAGGACAAACTCTTTGATATCGTCAATGTAAATCCATGGACCCTTGGATGGATTTGGTATTCAAATGTAGAGTTGCTGGGATTAATCTACATTTTACTGGATTACTTACATAACATGATCAAGCTTCAAAGCTATGATAGTTTATCTCTACCCTGTCATGCTGCGAAGGAAACGGGCGCTCTCCAAGCTGCCAAAAATCTGCTGGAGAAGCAAGTGGAAGAACTAACATGGAGATTGCAGCTAGAGAAACGAATGAGGGCTGACATGGAGGAAGCCAAGACTCGAGAAAACACAAAATTGAAGGCTGATTTGGAAGAAATGAGAACTCAATTTCAGGAAACGAAAGCACTGCTTAATGAGGAACGTGAAGCTGCAAATAAAATAGTTGAGCAAGTTCCAGTCATACAGGAGGTTCCCGTTGTTGATCATGAGCTGATAAATAAGTTAACTACTGAAAATGAAGAGCTTAAGGCTCTTGTAAGTACTTTGGAAAATAAAATTGATGAAACAGAAAGGAAATTTGAGGAAAGTAACAGACTTAGTGAAGAGCGGCTGAAGCAGGCTACGGAGGCAGAGTCAAAGATAATCGAATTAAAGACTGCCATGCAAAGGCTTGAGGAAAAATTATCTGACTTGGAAACTGAGGACCAAATTCTGAGGCAGCAAACACTGCTAAAACCTCCTTCAAGAAAGATGTCTGGACGTATAGCAATGCAGCCTTTGGAAAATGGCCACCATGAATTACTAAGCAATGCGCCATCAAAAAAGTACGGTACTGATGCTGATGCAAAATTGAGGAGATCTCAAATTGAAAGGCAGAACGAAGGCATGGATGCTCTATCAAAATACCTGACACAGGATCTTGGGTACAGTGAGGGAAAACCTATTGCTGCTTTTGTAATTTATAAATCTCTCCTCCATTGGAGATCATTTGAAGCAGAAAAAACAAGTGTTTTTGATCGGCTTATTCAGCTGATTGGTTCTGCAATTGAGGGTTTTCGGTCATCTTCTGCCCTTCCAGTTGGCACCCTCGATGTGGTGCGGCAAGTTGAGGCCAAATATCCTGCTCTACTTTTCAAGCAGCAGCTAACAGCGTATGTAGAAAAGATATATGGAATAGTTAGAGACAACCTAAAGAAGGAACTATCGCCGTTGATTTCAACTTGCATCCAGGCTCCCAGATCTTCGAGAGGAAATATTTTGAAATCATCTGGCCAGGAAAATAGTAGTAGCCCTCCCAGTAATTCATGGAGCAGCATCATCGATAACCTTAATGATCATCTGTGTAGATTGCGAAAGAACTTCGTGCCTAACGTTTTGGTTCAGAAGATATTCACTCAGGTTTTTTCATATATCAACGTTCAACTTTTCAACAGTCTTCTACTTCGTCGAGAGTGCTGTACGTTTAGCAATGGGGAATATGTGAAGTCAGGATTGGCTGAGTTAGAGATTTGGTGTAGCCAAGCAAACGAAGAGTATGCTGGGCCATCTTGGGATGAGCTAAAACCGGTGAGGCAAGCTGTTGGATTCTTGGTTATTCACCAGAAGTCTAGAATATCTTATGATGAAATTACAAATGACCTCTGTCCAGTTATTTCTAGTATGAAGGTTATGATGACTGAGGATTCCAATGATGAAGATAGTAGTTCCTTTTTGTTGGATGACACTTCCAGAATCTTCTTCTATGGTTGGGGTCGATATGTTGAGCCAGGCAAGTGGAATGGAATTTGTTTCGTAAGATCTCAATTCCGGAAGGAGGTGGCATACAAGGCTTGTTGA 5199 41.8 MINIVGGVTFQFRCSNFIRQNPERHPLPTRRNNSQFSSLFSPQNLLFQSRSTRRSNTISADGTPFFHRHPLSHCHCHCHCHCHCHFLINVGSLASKLQPSRHFNLHSSSIHQYSSTEHNETLLLQSSHNPLFMVFRTNDNAGPSRAHPFPSAFGSEPCVSLGIRYLDLGSVADRISPTMAGQVNVAVGSLVWIEDPEVAWLDGEVVEVNGQDIKVLCTSGATVSDTSQDVTFDLLCLTVRYCWLVEVKSSNVYPKDPEFPSCGVDDMTKLAYLHEPGLLQNLKSRYDVNEIYVSHYSFLLIGENSFLGCELLTYTGSILIAVNPFRRLPHLYDNHMMQQYKGAALGELSPHPFAIANSAYRQMINESISQSILVSGESGAGKTESTKMLMRYLAYVGGRAGGKAATGERSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQSWRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPTEEIEKYKLGNPRTFHYLNQSNCYELDGVDDSKEYLSTRKAMDVVGISTTEQDAIFRVVAAVLHLGNVEFAKGKDVDSSEPKDDKARFHLKMSAELFMCDEKALEDSMCTRVIVTRDETITKCLDSDSASLSRDALAKIVYSRLFDWIVDKINNSIGQDPHSKNLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFIDNQDILDLIEKKPGGVLALLDEACMFPRSTHDTFAQKLYQTFKDHKRFSKPKLSRTDFTICHYAGDVTYQTELFLDKNKDYVVAEHQALLSASKCPFVSGLFPPLPEETSKSSKFSSIGTRFKQQLQSLLETLNATEPHYIRCVKPNNLLKPAIFENNNVLQQLRCGGVMEAIRISCAGYPTRKTYDEFIEALCNSLFTGLVDSCNEATACKRLLEKVNLKGYQIGKTKVFLRAGQMAELDACRTEVLGRSAIVIQRKVRSYLGRRNFILLRLAAIQIQALCRGHIARQHYEDIRMEAASIKIQKYWRMHFARCCYKRLCSSAVAIQAGIHGMVARKELKFRRQTRAAIIIQWCPVNMVERRSQMSFCNGNVPTANQRLPESGSKDLWWESREIAYIVGKVSFRCPIPQPHIRPKKSIVTPPHFAIYVLKDKLFDIVNVNPWTLGWIWYSNVELLGLIYILLDYLHNMIKLQSYDSLSLPCHAAKETGALQAAKNLLEKQVEELTWRLQLEKRMRADMEEAKTRENTKLKADLEEMRTQFQETKALLNEEREAANKIVEQVPVIQEVPVVDHELINKLTTENEELKALVSTLENKIDETERKFEESNRLSEERLKQATEAESKIIELKTAMQRLEEKLSDLETEDQILRQQTLLKPPSRKMSGRIAMQPLENGHHELLSNAPSKKYGTDADAKLRRSQIERQNEGMDALSKYLTQDLGYSEGKPIAAFVIYKSLLHWRSFEAEKTSVFDRLIQLIGSAIEGFRSSSALPVGTLDVVRQVEAKYPALLFKQQLTAYVEKIYGIVRDNLKKELSPLISTCIQAPRSSRGNILKSSGQENSSSPPSNSWSSIIDNLNDHLCRLRKNFVPNVLVQKIFTQVFSYINVQLFNSLLLRRECCTFSNGEYVKSGLAELEIWCSQANEEYAGPSWDELKPVRQAVGFLVIHQKSRISYDEITNDLCPVISSMKVMMTEDSNDEDSSSFLLDDTSRIFFYGWGRYVEPGKWNGICFVRSQFRKEVAYKAC 1732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25176357 25207932 + Lsi05G017860.1 Lsi05g01786 664278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01786 1732 Coils Coil 1230 1264 - -
Lsi05g01786 1732 ProSiteProfiles Dilute domain profile. 1460 1702 IPR002710 -
Lsi05g01786 1732 Coils Coil 1286 1320 - -
Lsi05g01786 1732 CDD MYSc_Myo11 276 944 IPR036018 -
Lsi05g01786 1732 SMART iq_5 958 980 IPR000048 GO:0005515
Lsi05g01786 1732 SMART iq_5 1006 1028 IPR000048 GO:0005515
Lsi05g01786 1732 SMART iq_5 1029 1051 IPR000048 GO:0005515
Lsi05g01786 1732 SMART iq_5 981 1003 IPR000048 GO:0005515
Lsi05g01786 1732 Gene3D - 663 847 - -
Lsi05g01786 1732 Gene3D - 891 954 - -
Lsi05g01786 1732 Pfam Myosin N-terminal SH3-like domain 187 224 IPR004009 GO:0003774|GO:0005524|GO:0016459
Lsi05g01786 1732 Coils Coil 1205 1225 - -
Lsi05g01786 1732 SMART DIL_2 1583 1686 IPR002710 -
Lsi05g01786 1732 PANTHER MYOSIN-6-LIKE ISOFORM X1 184 1063 - -
Lsi05g01786 1732 Gene3D - 1009 1061 - -
Lsi05g01786 1732 Gene3D - 959 1008 - -
Lsi05g01786 1732 PANTHER MYOSIN-6-LIKE ISOFORM X1 1472 1673 - -
Lsi05g01786 1732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 243 1010 IPR027417 -
Lsi05g01786 1732 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 186 257 IPR004009 GO:0003774|GO:0005524|GO:0016459
Lsi05g01786 1732 ProSiteProfiles IQ motif profile. 1032 1059 IPR000048 GO:0005515
Lsi05g01786 1732 PANTHER MYOSIN 1472 1673 - -
Lsi05g01786 1732 Pfam Myosin head (motor domain) 264 944 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi05g01786 1732 Gene3D Myosin VI head, motor domain, U50 subdomain 536 825 - -
Lsi05g01786 1732 ProSiteProfiles IQ motif profile. 982 1011 IPR000048 GO:0005515
Lsi05g01786 1732 MobiDBLite consensus disorder prediction 1537 1556 - -
Lsi05g01786 1732 Pfam DIL domain 1584 1676 IPR002710 -
Lsi05g01786 1732 ProSiteProfiles Myosin motor domain profile. 262 956 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi05g01786 1732 PRINTS Myosin heavy chain signature 420 447 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi05g01786 1732 PRINTS Myosin heavy chain signature 653 681 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi05g01786 1732 PRINTS Myosin heavy chain signature 369 394 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi05g01786 1732 PRINTS Myosin heavy chain signature 706 734 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi05g01786 1732 PRINTS Myosin heavy chain signature 312 331 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi05g01786 1732 ProSiteProfiles IQ motif profile. 1007 1036 IPR000048 GO:0005515
Lsi05g01786 1732 Gene3D Kinesin motor domain 265 886 IPR036961 -
Lsi05g01786 1732 Coils Coil 1328 1362 - -
Lsi05g01786 1732 Pfam IQ calmodulin-binding motif 985 1002 IPR000048 GO:0005515
Lsi05g01786 1732 Pfam IQ calmodulin-binding motif 1009 1028 IPR000048 GO:0005515
Lsi05g01786 1732 Pfam IQ calmodulin-binding motif 961 979 IPR000048 GO:0005515
Lsi05g01786 1732 PANTHER MYOSIN-6-LIKE ISOFORM X1 1194 1471 - -
Lsi05g01786 1732 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1006 1055 IPR027417 -
Lsi05g01786 1732 SMART MYSc_2a 256 957 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lsi05g01786 1732 Gene3D - 476 534 - -
Lsi05g01786 1732 PANTHER MYOSIN 184 1063 - -
Lsi05g01786 1732 PANTHER MYOSIN 1194 1471 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01786 Lsi-Chr5:25176357 Lsi11g00416 Lsi-Chr11:4374341 0 dispersed
Lsi02g02171 Lsi-Chr2:28193940 Lsi05g01786 Lsi-Chr5:25176357 0 transposed
Lsi05g01786 Lsi-Chr5:25176357 Lsi09g01808 Lsi-Chr9:26861807 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01786 K10357 - pvy:116142503 1905.95