Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01787 ATGGAGACAAATATTATTATGATGAATAATACCTGTATCAGTATCCCTCCATTGGCTCAGACCATTGATGGTGATCACTTCTTTGATCACCGGTGTATATGGGTCAATGGACCGGTGATCGTGGGAGCGGGACCATCTGGATTGTCAGTAGCAGCTGCTCTCAAACAACAAGGCGTCCCGTTCGTCGTAGTCGATCGAGCTGACTGCATTGCCTCTCTTTGGCAGCACCGTACGTATGATCGTCTCAAACTTCACCTTCCAAAGCAATTCTGTCAACTTCCCAACTTCCCTTTCCCAGAGGAGTTTCCTGCTTACCCCTCCAAGTTTCAGTTCATTTCCTACTTGGAATCCTATGCCAACCATTTTGATATTGCCCCACGTTTCAACGAGACAGTGCAGTCAGCCAAGTATGACGAAACTTTCGGCCTCTGGCGAGTCAAAACCATGTCGTTGAGTCCAAAGCCGACCCAGGTTGAGTACATTTGCCGGTGGTTGGTTGTCGCCACTGGAGAGAATGCTGAGAAGGTCGTGCCGGAGTTTGAAGGGATGGAGGAGTTTGGAGGCCATGTTATGCATGCTTGTGAGTACAAATCTGGTGAGGCTTACCATGGGAAACGAGTGCTTGTCGTCGGGTGTGGGAACTCCGGCATGGAAATTTCACTTGATCTTTGTAACCATGACGCCAAACCATCCATGGTCGTACGAAGCTCGGTTCATGTATTGCCCAGAGAAATACTTGGAAAATCAACTTTTGAAGTAGCAATTTCACTGATGAAATGGCTGCCACTTCATATGGTGGACAAGATGCTGCTGATCATTTCCAGACTTGTTCTTGGGAACATTGAGAAGCATGGACTCAAAAGGCCGTCAATGGGACCTTTGCAGCTTAAAAACGCAGCTGGAAAGACACCCGTGTTGGATATCGGAGCGCTGCAGAAGATAAGGGCTGGCGAGATCAAGGTGGTGCCCGGAATAAAAAAATTCCGGCGAGGTGCAGTGGAGCTGGTCAATGGAGACGTTCTAGAGATTGATTCTGTAATTCTAGCTACTGGCTATCGCAGCAATGTTCCATCTTGGCTCAAGGTGAGCAAGTTTTTTAACATTTTTTCTAAGTTATGGAAGTTGGGTTCAGTTTTTAAAGTCTCTTTATTTACCATACCCTTCAGTTCTTCCAAATTTTGTGTCCAACTTGAGAGCTCCTCTGTCCTAAATTATTTGATTGCACAGGAAAATGAGTTCTTTTCCAGTGATGGGATTCCAAAAAGTCCATTCCCAAATGGGTGGAAAGGCAAAGCTGGACTCTATGCTGTTGGGTTCACAAGAAAAGGCTTATCAGGAGCTTCATTGGACGCCATTAATGTAGCTCAGGACATTGCCAAGAGCTGGAAAGAAGATACTAAACAGAAGAGAAAATCAGTGGCAGCTCGCCACAGAAGATGCATTTCACATTTCTAA 1455 45.91 METNIIMMNNTCISIPPLAQTIDGDHFFDHRCIWVNGPVIVGAGPSGLSVAAALKQQGVPFVVVDRADCIASLWQHRTYDRLKLHLPKQFCQLPNFPFPEEFPAYPSKFQFISYLESYANHFDIAPRFNETVQSAKYDETFGLWRVKTMSLSPKPTQVEYICRWLVVATGENAEKVVPEFEGMEEFGGHVMHACEYKSGEAYHGKRVLVVGCGNSGMEISLDLCNHDAKPSMVVRSSVHVLPREILGKSTFEVAISLMKWLPLHMVDKMLLIISRLVLGNIEKHGLKRPSMGPLQLKNAAGKTPVLDIGALQKIRAGEIKVVPGIKKFRRGAVELVNGDVLEIDSVILATGYRSNVPSWLKVSKFFNIFSKLWKLGSVFKVSLFTIPFSSSKFCVQLESSSVLNYLIAQENEFFSSDGIPKSPFPNGWKGKAGLYAVGFTRKGLSGASLDAINVAQDIAKSWKEDTKQKRKSVAARHRRCISHF 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25220588 25222634 + Lsi05G017870.1 Lsi05g01787 664279

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01787 484 PRINTS Pyridine nucleotide disulphide reductase class-II signature 37 59 - -
Lsi05g01787 484 PRINTS Pyridine nucleotide disulphide reductase class-II signature 202 226 - -
Lsi05g01787 484 Gene3D - 38 376 IPR036188 -
Lsi05g01787 484 PANTHER INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA3-RELATED 409 482 - -
Lsi05g01787 484 PRINTS FAD-dependent pyridine nucleotide reductase signature 38 57 - -
Lsi05g01787 484 PRINTS FAD-dependent pyridine nucleotide reductase signature 206 224 - -
Lsi05g01787 484 PRINTS FAD-dependent pyridine nucleotide reductase signature 162 180 - -
Lsi05g01787 484 PANTHER INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA3-RELATED 22 367 - -
Lsi05g01787 484 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 22 367 - -
Lsi05g01787 484 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 409 482 - -
Lsi05g01787 484 SUPERFAMILY FAD/NAD(P)-binding domain 319 467 IPR036188 -
Lsi05g01787 484 Pfam Flavin-binding monooxygenase-like 40 357 IPR020946 GO:0004499|GO:0050660|GO:0050661
Lsi05g01787 484 SUPERFAMILY FAD/NAD(P)-binding domain 39 238 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01787 K11816 YUCCA; indole-3-pyruvate monooxygenase [EC:1.14.13.168] - csv:101221268 835.869
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01787 Lsi-Chr5:25220588 Lsi08g01158 Lsi-Chr8:20208723 5.41E-163 dispersed
Lsi10g00842 Lsi-Chr10:12047422 Lsi05g01787 Lsi-Chr5:25220588 1.46E-13 dispersed
Lsi06g00877 Lsi-Chr6:18305743 Lsi05g01787 Lsi-Chr5:25220588 6.56E-27 transposed
Lsi06g01064 Lsi-Chr6:20861538 Lsi05g01787 Lsi-Chr5:25220588 1.04E-18 transposed
Lsi08g01100 Lsi-Chr8:19629326 Lsi05g01787 Lsi-Chr5:25220588 1.92E-134 transposed
Lsi05g01070 Lsi-Chr5:18234548 Lsi05g01787 Lsi-Chr5:25220588 0 wgd
Lsi05g01787 Lsi-Chr5:25220588 Lsi09g01809 Lsi-Chr9:26901865 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g812 Blo01g00310 . . Bda08g00015 . . . . . . Cma06g01281 Cma14g01858 Car06g01100 Car14g01664 . Cpe08g00368 Cpe03g01556 Bhi01g00033 . . . . . . . . . . . . . . Cone15ag0211 . . Lsi05g01787 . . Cme06g00434 . . . . Bpe05g01121 . . . . Cmo06g01287 Cmo14g01903 . . . . . . . . . . . . . Cla05g00392 Cam05g0426 Cec05g0431 Cco05g0431 Clacu05g0422 Cmu05g0404 Cre05g0466 . Csa03g01149 Chy06g00414 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000555 4 3 5 3 5 3 6 3 3 3 3 3 6 3 3 6 3 3 6 3 3 3 3 3 3 3 3 5 3 2 108