Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01788 ATGTCTCTCGCGTTGAAGAAAATAATATGCGTGGATCAAAAGAGATCTCTCTATCTTTCTGAAGCTTTTCACCGTCACTCTGCTGTAATGCACTCCACTGCCAACCTCCGCTCCCTTCCTCTCTCACTTTCCATCGTTTGTTCATCCTCGTCTTCTTTTCCAAATGGAAAATCGGAACTGAAGCAAGTAAAACTCAGGGACGACTGGAGGCAACGCTCCAGACCAATTCCTCCTGGAGGCACCTATCCTGCCAAAGAACATTGCAGTCGATGTGGCTTGTGCGATACTTATTACATTGCCCACGTCAAGGATGCGTGTGCTTTCTTGGGCGATGGCATGTCAAGAATTGAAGAATTGGAACCTGTAGTTCACGGTAGAGGGAGGAAGACAGATATGCTGGATGAGACGTATTTTGGAGTTCATGAGAAGCTATTATATGCCCGTAAGATTAAAGCAGTGGAAGGAGCTCAATGGACAGGGATAGTGACAACTATAGCAATTGAAATGCTTAAATCAGGCATGGTCGAGGCTGTTATTTGTGTACAGAGTGATCCAGAGGACAGACTCAGTCCAAGGCCTATTTTAGCAAGGACACCAGATGAAGTCCTAGCAGCCAGAGGAGTGAAGCCAACGTTGTCTCCGAACTTGAATACCCTTGCTTTAGTTGAGGCTGCAGGAGTCAAACGTCTTCTTTTCTGTGGCGTGGGTTGCCAAGTTCAAGCATTAAGATCTGTGGAGCAGCATTTAAATCTGGAGAAGCTTTATGTACTGGGCACTAATTGTGTGGATAATGGAACTCGGGAAGGACTAGATAAATTTCTCAAGGCGGCAAGTACGGAACCAGAGACAGTTCTTCATTATGAGTTCATGCAAGATTACAAGGTTCCATATTTCTGTCTACCTGCAAATGATTTGGTTGATGTTATTGCACCATCTTGCTACAGCTGTTTTGATTATACAAATGCTTTAGCGGATCTGGTTGTTGGTTACATGGGTGTGCCAAAATATTCTGGAATCAGCATGACCCAACATCCACAGTATATTACTGTTAGAAATGAGCGTGGTAGAGAGATGCTGGGTTTAGTAGAACAGTACTTGGAAATTACTCCAACAGTTAGCGATGGTAATCGAAGACCTTTAGTTATGGAGACTGTGAAGGCAGATGATGATGCTAAGCTTGGAAGAGGTCCTTCACAACCTGCTCCAAAATTCATTGGGAACATCATAGCGTTTTTTCTGAACTTGATTGGCCCGAAAGGTCTGGAGTTTGCTCGTTATTCACTGGATTACCATACCATCCGGAACCATTTATATGTCTCCCGAACATGGGGAAAACAAAGAGCTGATAAACATGAGCCCACATACGCTAAAAAGATAGTGGATTTGTACAACCAGAAGGGTGAAATTGATCGCATCCTTTCCAACTCAAAGTAA 1434 43.79 MSLALKKIICVDQKRSLYLSEAFHRHSAVMHSTANLRSLPLSLSIVCSSSSSFPNGKSELKQVKLRDDWRQRSRPIPPGGTYPAKEHCSRCGLCDTYYIAHVKDACAFLGDGMSRIEELEPVVHGRGRKTDMLDETYFGVHEKLLYARKIKAVEGAQWTGIVTTIAIEMLKSGMVEAVICVQSDPEDRLSPRPILARTPDEVLAARGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEQHLNLEKLYVLGTNCVDNGTREGLDKFLKAASTEPETVLHYEFMQDYKVPYFCLPANDLVDVIAPSCYSCFDYTNALADLVVGYMGVPKYSGISMTQHPQYITVRNERGREMLGLVEQYLEITPTVSDGNRRPLVMETVKADDDAKLGRGPSQPAPKFIGNIIAFFLNLIGPKGLEFARYSLDYHTIRNHLYVSRTWGKQRADKHEPTYAKKIVDLYNQKGEIDRILSNSK 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25224320 25244461 - Lsi05G017880.1 Lsi05g01788 664280

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01788 477 Pfam Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus 228 370 IPR007525 -
Lsi05g01788 477 Pfam Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term 146 219 IPR007516 -
Lsi05g01788 477 PANTHER 7-HYDROXYMETHYL CHLOROPHYLL A REDUCTASE, CHLOROPLASTIC 59 468 IPR045220 GO:0016491
Lsi05g01788 477 SUPERFAMILY Prismane protein-like 106 209 IPR011254 GO:0003824|GO:0016491
Lsi05g01788 477 PANTHER 7-HYDROXYMETHYL CHLOROPHYLL A REDUCTASE, CHLOROPLASTIC 59 468 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01788 K18010 HCAR; 7-hydroxymethyl chlorophyll a reductase [EC:1.17.7.2] - csv:101208123 851.277
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g813 . . Bda03g01105 . Bpe04g00973 . Bma04g01031 . . . . Cma14g01860 . Car14g01665 . . Cpe03g01557 Bhi01g00032 . . . . . . . . . . . . . Cone14ag0198 . . . Lsi05g01788 . . Cme06g00433 . . . . . . . . . . Cmo14g01904 . . . . . . . . . . . . . Cla05g00391 Cam05g0425 Cec05g0430 Cco05g0430 Clacu05g0421 Cmu05g0403 Cre05g0465 . Csa03g01148 Chy06g00413 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011151 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 30