Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01792 ATGGGAAAAAAATTGTGCCTGATAAATTATGATCTGGCGAACCCCGACACTAGAACAGAACACATCGTCTTGTTTCTAATTATCTTCTGCCGACTGCAGCAGTTGCTCCTTCCGAAACCGGAAATTCACCGCCATGACGTTCCAATCCGGCAGATTGTCTCTGATCACTGGCGCTTCCCTGAATCTTTCAGTCCAAGCATACACCCGAGGGAACTCGCCGGCGTCCAACAATTTCACTCCCGTCACTTGTTCAATCATCCCCAACCAATACGCAATCGCGCCGAACGCCAAATCCACCATTCCGATCTCATCTCCGCCGAAGAACTTCCTCTTTCCGTCGCCGAATCCCCATTCCTCGACAGTTCTCAGCATCTCCAAGCTCTGATTCTTCGCAACCTCCCGTTCTTCCTCATTCTTCGCACGGAATATCATAAAAGCAGCTGTGCCCTAAAATTACACCAAACCACCAATCAAATTCAATTAGTGGCTCTTTCGAAAGGATCGGAAGGCAGTAAGGGATTTTGCGACCATGTTTCTTCGATGTACTCGAGAATGATGATGGATTCGCAGATAGGGTTTCCGCCATGGACGAGCACTGGAATCTTCTTATTGCAGCAGTTGCTCCCTCCGGCGTCGGAAAGCCTCCGCCATGAGGTTCCAATCCGGCAGATTGTTTCTAATCACCGGCGCTTCCCTGAATCTTTGAGTCCAAGCATACACCCGAGGGAACTCGTCGGCGTCCAACACTTTCACTCCCGTCACTTGTTCAATCATTCCCAACCAATACGCAATCCCGCCGAACGCCAAATCCGCCATTCCGATCTCATCTCCGCCGAAGAATTTCCTCTCTCCACCGTCGAATCCCCATTCCTCGACGGTTCTCAACATCTCCAAGCTCTGATTCTTCGCATCCTCACGTTCTTCCTCATTCTTCGCACGGAATATCATAAAAATCGCTGTGCCCTAAAATTACCAAACCATCAACTAAATTCAATTAGATTTTACCTTGTCGTCTATGAATTTGATCCAGAATCGAGCGGTGGCTCTCTCGTAAGGATCGGAAGGCAGCAAGGGATTTTGCGGCCATGTTTCTTCGATGTACTGGAGGATGATAGAGGATTCGCAGATGGGTTTTCCGGCATGGACGAGGACTGGAATCTTCTTGTGAACGGGATTGTATTGCAAGAGCAGAGGAGATTTGTTGGCGAGATCTTCTTCTATGTATTCGAATGGAATGCATTTGAGAGCCAGAGCCCAAATAACTCTATGACAGAAGAAGTGAAACTCCATGGAGCTTGGCCAAGTCCATTCAGTTACAGAGTCATTTGGGCTCTGGCTCTCAAAGGCATTCCATACGAATATATAGAAGAAGATCTCACCAACAAATCTCCTCTGCTTTTGCAATACAATCCCGTTCACAAGAAGATTCCAGTCCTCGTCCATGCCGGAAAACCCATCTGTGAATCCTCCATCATCCTCCAGTACATCGAAGAAACATGGCCGGAGAATCCCCTTTTGCCCTCCGATCCTCTTCAGAGAGCTGCCGCTCGGTTCTGGATCAAGTTCATAGAAGACAAGAGCTCGGAGCTTTGGGGAGTATTTATTGCGGAAGGGGAAGAAGATAAGGAAAAGGCGAGAAAAGCGACCTTGGAAGTTCTGAAGACGGTGGAAGAACATGCACTCGGCGACAAGAAATTCTTCGGCGGCGATGAAATCAATATGGTGGATTTGGCGTACGGCTTCCTCGCGCGGTGGCTGCCGGTGACTGAAGAGGTGGTGGATATGAAAATCCTTGAACCAAATACGGTCCCTCGCTTCTATGCTTGGGCAGAGAACTTCCTGCAAGCCGCCGTGATCAGAGACAATCTGCCGGATCACGACGAGATGGTGCCGCGGCTCAAGTTACGGAGGGAGCAGCTATTGAAAATTACGAAGAAATCATAA 1944 48.77 MGKKLCLINYDLANPDTRTEHIVLFLIIFCRLQQLLLPKPEIHRHDVPIRQIVSDHWRFPESFSPSIHPRELAGVQQFHSRHLFNHPQPIRNRAERQIHHSDLISAEELPLSVAESPFLDSSQHLQALILRNLPFFLILRTEYHKSSCALKLHQTTNQIQLVALSKGSEGSKGFCDHVSSMYSRMMMDSQIGFPPWTSTGIFLLQQLLPPASESLRHEVPIRQIVSNHRRFPESLSPSIHPRELVGVQHFHSRHLFNHSQPIRNPAERQIRHSDLISAEEFPLSTVESPFLDGSQHLQALILRILTFFLILRTEYHKNRCALKLPNHQLNSIRFYLVVYEFDPESSGGSLVRIGRQQGILRPCFFDVLEDDRGFADGFSGMDEDWNLLVNGIVLQEQRRFVGEIFFYVFEWNAFESQSPNNSMTEEVKLHGAWPSPFSYRVIWALALKGIPYEYIEEDLTNKSPLLLQYNPVHKKIPVLVHAGKPICESSIILQYIEETWPENPLLPSDPLQRAAARFWIKFIEDKSSELWGVFIAEGEEDKEKARKATLEVLKTVEEHALGDKKFFGGDEINMVDLAYGFLARWLPVTEEVVDMKILEPNTVPRFYAWAENFLQAAVIRDNLPDHDEMVPRLKLRREQLLKITKKS 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25252352 25259553 - Lsi05G017920.1 Lsi05g01792 664284

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01792 647 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 425 504 IPR004045 -
Lsi05g01792 647 CDD GST_C_Tau 510 636 IPR045074 GO:0004364|GO:0006749
Lsi05g01792 647 Pfam Glutathione S-transferase, C-terminal domain 536 614 IPR004046 -
Lsi05g01792 647 CDD GST_N_Tau 427 500 - -
Lsi05g01792 647 SFLD Glutathione Transferase (cytosolic) 423 642 IPR040079 -
Lsi05g01792 647 Gene3D - 509 644 - -
Lsi05g01792 647 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 425 638 IPR045073 -
Lsi05g01792 647 Pfam Glutathione S-transferase, N-terminal domain 426 497 IPR004045 -
Lsi05g01792 647 PANTHER GLUTATHIONE S-TRANSFERASE 425 638 - -
Lsi05g01792 647 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 509 633 IPR010987 -
Lsi05g01792 647 SFLD Main.3: Omega- and Tau-like 423 642 IPR045073 -
Lsi05g01792 647 SUPERFAMILY GST C-terminal domain-like 498 638 IPR036282 -
Lsi05g01792 647 Gene3D Glutaredoxin 421 508 - -
Lsi05g01792 647 SUPERFAMILY Thioredoxin-like 427 525 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01792 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101207634 406.371
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00829 Lsi-Chr4:8002650 Lsi05g01792 Lsi-Chr5:25252352 5.60E-06 dispersed
Lsi05g00364 Lsi-Chr5:4609965 Lsi05g01792 Lsi-Chr5:25252352 2.48E-08 dispersed
Lsi05g01792 Lsi-Chr5:25252352 Lsi05g01794 Lsi-Chr5:25257655 1.64E-101 dispersed
Lsi10g00753 Lsi-Chr10:10352564 Lsi05g01792 Lsi-Chr5:25252352 2.16E-09 dispersed
Lsi05g01791 Lsi-Chr5:25249803 Lsi05g01792 Lsi-Chr5:25252352 1.16E-66 tandem
Lsi05g01792 Lsi-Chr5:25252352 Lsi05g01793 Lsi-Chr5:25255588 1.23E-102 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g816 Blo01g00311 . . Bda08g00016 . . . Bma05g01266 . . . Cma14g01861 . . . Cpe08g00369 Cpe03g01558 Bhi01g00030 . . . . . . . . . . . . . . . . . Lsi05g01792 . . Cme06g00431 . . . . . . . . . Cmo06g01286 Cmo14g01905 . . . . . . . . . . . . . . . . . . . . . Csa03g01146 Chy06g00410 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000433 1 5 2 3 1 5 3 5 5 4 2 4 4 7 7 4 4 1 5 4 3 3 3 5 6 6 2 5 5 6 120