Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01794 ATGACAGAAGTGAAGCTCCATGGAACTTGGCCAAGCCCTTACAGTTACAGAGTCATTTGGGCTCTGGCTCTCAAGGGCATTCCGTACGAATACATAGAAGAAGATCTCGCCAACAAAAGCCCTCTACTCTTGCAGTACAATCCCGTTCACAAGAAGATTCCAGTGCTCGTCCATGGCGGAAACCCTATCTGCGAATCCATCATCATTCTCGAGTACATCGAAGAAACATGGTCGCAAAATCCCTTACTGCCTTCCGATCCTTTCGAAAGAGCCACTGCTCGATTCTGGATCAAATTCATAGACGACAAGGGCACAGCTGCTTTTATGATATTCCGTGCGAAGAATGAGGAAGAACGGGAGGTTGCGAAGAATCAGAGCTTGGAGATGCTGAGAACTGTCGAGGAATGGGGATTCGGCGACGGAAAGAGGAAGTTCTTCGGCGGAGATGAGATCGGAATGGTGGATTTGGCGTTCGGCGCGATTGCGTATTGGTTGGGGATGATTGAACAAGTGACGGGAGTGAAATTGTTGGACGCCGGCGAGTTCCCTCGGGTGTATGCTTGGACTGAAAGATTCAGGGAAGCGCCAGTGATCAGAGACAATCTGCCGGATTGGAACGTCATGGCGGTGAATTTCCGGTTTCGGAAGGAGCAACTGCTGCAGTCGGCAGAAGATAATTAG 681 49.93 MTEVKLHGTWPSPYSYRVIWALALKGIPYEYIEEDLANKSPLLLQYNPVHKKIPVLVHGGNPICESIIILEYIEETWSQNPLLPSDPFERATARFWIKFIDDKGTAAFMIFRAKNEEEREVAKNQSLEMLRTVEEWGFGDGKRKFFGGDEIGMVDLAFGAIAYWLGMIEQVTGVKLLDAGEFPRVYAWTERFREAPVIRDNLPDWNVMAVNFRFRKEQLLQSAEDN 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25257655 25258569 + Lsi05G017940.1 Lsi05g01794 664286

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01794 226 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 217 IPR045073 -
Lsi05g01794 226 CDD GST_N_Tau 4 77 - -
Lsi05g01794 226 Gene3D Glutaredoxin 1 85 - -
Lsi05g01794 226 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 81 IPR004045 -
Lsi05g01794 226 PANTHER GLUTATHIONE S-TRANSFERASE 1 217 - -
Lsi05g01794 226 Pfam Glutathione S-transferase, N-terminal domain 4 74 IPR004045 -
Lsi05g01794 226 Gene3D - 86 223 - -
Lsi05g01794 226 SFLD Main (cytGST) 1 223 - -
Lsi05g01794 226 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 86 218 IPR010987 -
Lsi05g01794 226 SUPERFAMILY Thioredoxin-like 4 102 IPR036249 -
Lsi05g01794 226 Pfam Glutathione S-transferase, C-terminal domain 111 196 IPR004046 -
Lsi05g01794 226 SUPERFAMILY GST C-terminal domain-like 75 215 IPR036282 -
Lsi05g01794 226 CDD GST_C_Tau 87 204 IPR045074 GO:0004364|GO:0006749
Lsi05g01794 226 SFLD Main.3: Omega- and Tau-like 1 223 IPR045073 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01794 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101207387 387.882
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01790 Lsi-Chr5:25246310 Lsi05g01794 Lsi-Chr5:25257655 3.50E-94 dispersed
Lsi05g01792 Lsi-Chr5:25252352 Lsi05g01794 Lsi-Chr5:25257655 1.64E-101 dispersed
Lsi05g01794 Lsi-Chr5:25257655 Lsi05g01929 Lsi-Chr5:26481032 1.65E-67 dispersed
Lsi05g01794 Lsi-Chr5:25257655 Lsi05g01796 Lsi-Chr5:25264784 2.49E-94 proximal
Lsi05g01793 Lsi-Chr5:25255588 Lsi05g01794 Lsi-Chr5:25257655 2.86E-147 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g826 . . . . . . . . . . . Cma14g01862 . . . Cpe08g00370 Cpe03g01560 Bhi01g00028 . . . . . . . . . . . . . . . . . Lsi05g01794 . . Cme06g00428 . . . . . . . . . Cmo06g01285 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000433 1 5 2 3 1 5 3 5 5 4 2 4 4 7 7 4 4 1 5 4 3 3 3 5 6 6 2 5 5 6 120