Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01798 ATGTCTTTCCTTGAAGAATTTCAAGCCAACCTGGAATCACTACCCAACATTCTTCAAAAGAAGTATGCTTTGCTGCGTGATCTAGATCAAAGTTTGCAAGGACTAGTAAAACAGAATGAGCAACGCTGTGAGCAAGAAATTGAGGATATTAAGCGGGGAGTTAAATGTGGTAATATTACTCCTGATACTTCACTCATTAGATTCTCTGATGAAGCTCTTGATGAACAGAAGCATAGCATCAGAATTGCCGATGAAAAGGTTGCCCTTGCTGTTCAGGCATATGATTTGGTAGATACCCACATACAACAGCTTGACCAGTATTTGAAGAATTTTGATGAAAAGCTTCGTCAAGAAAGAGGAAATGCTGCTTCAACTGGGTTACCAGCTCCAAGTGTGGATGGTAACACAAAATCTGGACGGGGAACAGAAGGTGGTAGAGGCGGGCGTAAAAAAAGAAATGGCCAGGCTGCGGCTGCAGCTGCTGCTACAGAAGCGCCAACTGCTGCAATTACCACAGGAATGGAACTTGAATTACCAGTTGATCCAAATGAACCAACTTACTGTCTCTGCAACCAAGTTAGTTACGGGGAGATGGTTGCCTGTGATAACCCTAATTGCAAGATCGAATGGTTTCATTTTGGCTGTGTCGGTCTAAAAGAACAACCAAAAGGAAAATGGTACTGTTCAGATTGTGCAGGCTCGAAAGGTCGCCGAAAAGGCAGATAA 726 43.11 MSFLEEFQANLESLPNILQKKYALLRDLDQSLQGLVKQNEQRCEQEIEDIKRGVKCGNITPDTSLIRFSDEALDEQKHSIRIADEKVALAVQAYDLVDTHIQQLDQYLKNFDEKLRQERGNAASTGLPAPSVDGNTKSGRGTEGGRGGRKKRNGQAAAAAAATEAPTAAITTGMELELPVDPNEPTYCLCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCSDCAGSKGRRKGR 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25268105 25270795 - Lsi05G017980.1 Lsi05g01798 664290

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01798 241 SMART PHD_3 187 232 IPR001965 -
Lsi05g01798 241 Pfam Inhibitor of growth proteins N-terminal histone-binding 3 111 IPR024610 -
Lsi05g01798 241 ProSitePatterns Zinc finger PHD-type signature. 188 231 IPR019786 -
Lsi05g01798 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 235 IPR013083 -
Lsi05g01798 241 PANTHER INHIBITOR OF GROWTH PROTEIN 2 163 IPR028651 -
Lsi05g01798 241 PANTHER INHIBITOR OF GROWTH PROTEIN 142 238 IPR028651 -
Lsi05g01798 241 PANTHER INHIBITOR OF GROWTH PROTEIN 4 2 163 - -
Lsi05g01798 241 PANTHER INHIBITOR OF GROWTH PROTEIN 4 142 238 - -
Lsi05g01798 241 MobiDBLite consensus disorder prediction 120 164 - -
Lsi05g01798 241 CDD PHD_Yng1p_like 187 232 - -
Lsi05g01798 241 Gene3D - 2 108 - -
Lsi05g01798 241 SMART ING_2 3 111 IPR024610 -
Lsi05g01798 241 CDD ING_plant 11 108 - -
Lsi05g01798 241 SUPERFAMILY FYVE/PHD zinc finger 175 232 IPR011011 -
Lsi05g01798 241 ProSiteProfiles Zinc finger PHD-type profile. 185 234 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01798 K11346 ING4; inhibitor of growth protein 4 - csv:101220012 416.772
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01663 Lsi-Chr1:15174364 Lsi05g01798 Lsi-Chr5:25268105 4.84E-21 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g829 . Blo12g00131 Bda03g01109 . Bpe04g01054 . Bma04g01035 . . . Cma06g01275 . Car06g01096 . . Cpe08g00372 . Bhi01g00022 . . . . . . . . . . . . . Cone14ag0202 Cone15ag0220 . . Lsi05g01798 . . Cme06g00422 . . . . . . . . . Cmo06g01284 . . . . . . . . . . . . . . Cla05g00384 Cam05g0418 Cec05g0423 Cco05g0423 Clacu05g0413 Cmu05g0396 Cre05g0458 . Csa03g01141 Chy06g00407 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004676 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 1 1 41