Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01799 ATGGTATATAGGAGAAGCGCCAAGCCACTAACCTTGGCCAACGCTCTTAGAGAAGGAAAAAAAAATGCCTACACGCTTCAGCAAAGTTGGGGAGGATTTCAGAAAATCATGAGCCTGACGACGACGACGATGCTTCTTCATCTGCAAAATGAGTGTGAACAGATGGAAAGAAGGAGAGTTGTTTGTGAAAATATTCTCAATCAATTATCCCCTCATTCAAGAAAGTTCATACTAGAAGATGAGCTCAAAGTTCCTTTAAAGGAGCGTTTTAGAAAGCCTGCAGCTTGGTGGAAGCATCAAGAAGAAGTAATGAGTCAAGGGGGTGAAGATAGAGTACACACGAGACAAGGCAACTCAGAATTTGCTTCTTTGGAAACTCTAAATGTTGATTATGCAAGTGAAAAGAAGAAGTCCTTGCGAGTTCGCTACATATACGGCATCGTCTTCCTGATGACAAATCTCATTGCTTGGTTTCTTCGAGATTATGGGCAAAGGATTTTAACCATACGAGTATATTACGGCTCGAAGAATCAGGACTGCGGCTTATATATGATCTTAAATCATGTGGAGCAGGAGGACAGGATTGTTTTCACGCACTCGGAGTTCTTCGTAACAAGAAAATTACATGAACCTCGCAATGTGTGGCATTCTAATTGGTGGAGCCTGAAGTTCATTGCATTTATTGTTTCAATACTGGTTCCATTCTTCTTCCCTCCAGCTCTTATCCAATTATATGGTGAATTTGCGCGCGCCGGTGCAGGGATATTTCTCCTCCTCCAACTGGTTAGTGTTATCCAGTTTATCTCATGGTGGAACAAGTACTGGATGCCTGATGAGAAGATGAAGCAGAGGTATTATCAATTTACATCTAGCATCAATTTATACATAACTTTCATTCATATTCTACAGCTGCTCCCTCGGATTATTCACGTCGACGATTTTTTACATAGCTTCCTTCTGTGGAATTGGCTTAATGTACTCCTTATACGTTCCAAAAGTGAGATGTGTTCTCAATATATTCTTCATATCTTGGACTTTGATTCTGCTCATTGTGATGATGGCTGTTTCTTTACATTCAAAGGTATGCTCCTCAAAATCGCCTTTTTTTTTAAATCTTTTTTGAATTCGGCTACAATATCACAGCTGTGGGCAGTTTCTATTTCAAAAGGAAGATTTAACTTACTGGTTAATAGAGGTCTGTTGTCATCTGGTATCATGGCTTCGTACCTCGTCTTCCTCTGCTGGTCTGCCATTAGAAGTGAATGGCTTTACAGTGAACCTGCGACTGAAAAATGCAGTGCACGGAAGGAAGAGAGCAGAAATAGCGACTGGATTACAATACTTAGCTTCTTAATTGCAATATGTGCTGTTGTTATGGCAACCTTCTCAACTGGTATTGATTCACAATCATTTCAGTTCCGAAAAGACGAAGTGAAAGAGGAAGATGATATTCCTTACAAGTATGGATTTTTCCATCTCACATTTTCTCTAGGGGCCATGTACTTTGCTATGCTCTTCATCAGCTGGAACCTCAACAACTCAGCCACAAAGTGGAGTATGGATGTTGGATGGACAAGTACTTGGGTTAAAATCTTTAATGAATGGTTTGCAGCGACAATATACTTGTGGACATTGATTTCTCCAGTGGTGAGACAGGAAAAGGTCAGGGATCATGAAGAAGGAGCCGTAGTGCAAGAAGAAAATGATTCACAAGAGAAGTTCTTCATACCTGAGCCCTGCAACATGTTCAGGCAATCATTTTTTCCTGCCTTCCTTGCAACAGCAATTCTCGTAATGCATTTTGTGGCATTTAAGTCTGCAGCTGTCACTGCCAATGCCGGGGGACACGAGCCGGTCCTTGAATTTTATATGCACGACATTCTCGGCGGTGGCAGCCCAACGGCGAGACCGATTACTGGTCTGCTGGGGAACATATACACTGGTCAAGTACCCTTTGCAACACCTATAGGCTTTCTTCCCCCAGACGGTGGTGTAGCAATCCCAAATGCCAACGGTGCTCTCCCTACTGTGAATGGCATCAATGGGATCCCTCTAGGAACTGGCTTGTCTGGCACTGCTTTTGCAGGAAATCCCAACCCACAGAATATCCCTCAGACCCAACCGGGACCTGATGGGTTGGGGCTAGGCTTCGGAACGATTACCGTCATTGATGACATCTTGACCACCGCGCCAGAGTTGGGCTCACAATCAATTGGCCAGGCACAAGGGGTGTATGTGGCTAGTTCAGCTGATGGAACTACGCAGATGATGGCATTTACAGCCATGCTTGAAGGAGGAGAATATGGGGACAGTCTCAACTTCTATGGAGTATTCAGGATTGGTAGCCCCTCATCACATTTGTCAGTGACTGGAGGAACTGGCAAGTTCAAGAATGCACGTGGGATTGCAGAGATGCGGTCGCTCATTCCTCCTGGCCAGCACGTCACAGATGGAGCAGAAACATTGCTGAGGGTCCTTAGAAGTATCTTATCAAATGTGATTAATGAGAGACACCCTCGTGATATAACATACCGGGTTATAAGCATAGGTAAAAGCAGCATCAAAAGAACGAAACAAATTTACGAGGTCGACCAGAGGCATACCATACATAAAACCCCTCCAAAATTTAATCACAAGCTGGAGATCCTTATTCGCGAATTAAGAGCAGCTTCATCAAGACCATATAGGCCCTTTGCCACGTCCATTCCCATTTCTCCTGCAATTCCAAATATTGATAAAGCCGAAGCTTGTAAAATGAAATTGCATCTTACCATACTGGACTCTGTAGAAGCTTTAGACAACGCGATTATTTCCGACCCATTCCCTCTAACAACGGTGGGCTTCAGATTCATAAGCTCCAAACAAGCCATCATCCGGAACTTAGAAGCTCCGGCCGCCACCGGATCGAGAACCCAAGGCTTCCCGGCCTTTACCGCCAGTTCAGCGGCGACCTTCATGGCGGGCAACCAGGCGGGGGAAAGTGTGCCGACATTGATACAGAGAGCATCGGCGTTGGGAGTGAAATCCGGCAACTCCTCGACGGAATGA 3048 44.39 MVYRRSAKPLTLANALREGKKNAYTLQQSWGGFQKIMSLTTTTMLLHLQNECEQMERRRVVCENILNQLSPHSRKFILEDELKVPLKERFRKPAAWWKHQEEVMSQGGEDRVHTRQGNSEFASLETLNVDYASEKKKSLRVRYIYGIVFLMTNLIAWFLRDYGQRILTIRVYYGSKNQDCGLYMILNHVEQEDRIVFTHSEFFVTRKLHEPRNVWHSNWWSLKFIAFIVSILVPFFFPPALIQLYGEFARAGAGIFLLLQLVSVIQFISWWNKYWMPDEKMKQRYYQFTSSINLYITFIHILQLLPRIIHVDDFLHSFLLWNWLNVLLIRSKSEMCSQYILHILDFDSAHCDDGCFFTFKGMLLKIAFFFKSFLNSATISQLWAVSISKGRFNLLVNRGLLSSGIMASYLVFLCWSAIRSEWLYSEPATEKCSARKEESRNSDWITILSFLIAICAVVMATFSTGIDSQSFQFRKDEVKEEDDIPYKYGFFHLTFSLGAMYFAMLFISWNLNNSATKWSMDVGWTSTWVKIFNEWFAATIYLWTLISPVVRQEKVRDHEEGAVVQEENDSQEKFFIPEPCNMFRQSFFPAFLATAILVMHFVAFKSAAVTANAGGHEPVLEFYMHDILGGGSPTARPITGLLGNIYTGQVPFATPIGFLPPDGGVAIPNANGALPTVNGINGIPLGTGLSGTAFAGNPNPQNIPQTQPGPDGLGLGFGTITVIDDILTTAPELGSQSIGQAQGVYVASSADGTTQMMAFTAMLEGGEYGDSLNFYGVFRIGSPSSHLSVTGGTGKFKNARGIAEMRSLIPPGQHVTDGAETLLRVLRSILSNVINERHPRDITYRVISIGKSSIKRTKQIYEVDQRHTIHKTPPKFNHKLEILIRELRAASSRPYRPFATSIPISPAIPNIDKAEACKMKLHLTILDSVEALDNAIISDPFPLTTVGFRFISSKQAIIRNLEAPAATGSRTQGFPAFTASSAATFMAGNQAGESVPTLIQRASALGVKSGNSSTE 1015
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25272019 25283464 + Lsi05G017990.1 Lsi05g01799 664291

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01799 1015 PANTHER SERINE INCORPORATOR 117 302 IPR005016 GO:0016020
Lsi05g01799 1015 Gene3D - 700 825 IPR044859 -
Lsi05g01799 1015 Pfam Dirigent-like protein 697 807 IPR004265 -
Lsi05g01799 1015 Pfam Serine incorporator (Serinc) 385 479 IPR005016 GO:0016020
Lsi05g01799 1015 Pfam Serine incorporator (Serinc) 134 295 IPR005016 GO:0016020
Lsi05g01799 1015 Pfam Serine incorporator (Serinc) 475 552 IPR005016 GO:0016020
Lsi05g01799 1015 PANTHER SERINC-DOMAIN CONTAINING SERINE AND SPHINGOLIPID BIOSYNTHESIS PROTEIN 395 561 - -
Lsi05g01799 1015 PANTHER SERINC-DOMAIN CONTAINING SERINE AND SPHINGOLIPID BIOSYNTHESIS PROTEIN 117 302 - -
Lsi05g01799 1015 PANTHER SERINE INCORPORATOR 395 561 IPR005016 GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01799 K23544 SERINC1; serine incorporator 1 - csv:101207145 588.956
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00852 Lsi-Chr4:8295463 Lsi05g01799 Lsi-Chr5:25272019 7.82E-15 dispersed
Lsi04g00853 Lsi-Chr4:8298321 Lsi05g01799 Lsi-Chr5:25272019 3.18E-33 dispersed
Lsi05g01799 Lsi-Chr5:25272019 Lsi11g00272 Lsi-Chr11:2773557 1.63E-68 dispersed
Lsi05g01799 Lsi-Chr5:25272019 Lsi02g01682 Lsi-Chr2:22616197 2.69E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g832 . . . . . . . . . . . Cma14g01865 . . . Cpe08g00375 Cpe03g01563 . . . . . . . . . . . . . . . . . . Lsi05g01799 . . Cme06g00420 Blo02g00636 . Bda11g00655 Bda13g00030 . . Bma02g00741 Bma06g01622 . . Cmo14g01910 . . . . . . . . . . . . . Cla05g00382 Cam05g0415 Cec05g0420 Cco05g0420 Clacu05g0411 Cmu05g0394 Cre05g0456 . Csa03g01139 Chy06g00405 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006899 2 1 1 2 0 1 0 1 1 1 1 1 1 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 1 1 37