Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01811 ATGGCAACAAGAATTGGATTGATGCTTCCTCGCCCGGTGACATTTGTCACCGGCAACGCCAAGAAGCTCGAGGAAGTTCGAGCAATATTGGGCAACTCTGTTCCTTTCCGGTCTCTCAAGCTTGACTTGCCGGAGTTGCAAGGCGAACCAGAAGATATATCGAAAGAGAAGGCTCGGTTGGCTGCTATCCAGGTGCATTTTCTTTTACATTTCTGTCATTCGATTAAGAATCAAAACAAAAGAGAGTTGACTGATCTGGAGTTGCCGGGTTTTGTAATTGGAAGGGCCATACATGTAAGTTGCTACATTATCAATGTCCCTTCTGAGGTGAAGTTTTGTTTGTTATGTCTGAACAATTTGTTGATGGCATATGAGGACAAGTCAGCATATGCTTCATGCATCTTTTCATTCTCTCTTGGGCCTGAATCTGAACCCATCACATTTGTAGGAAAAACTCCGTTATTTAGTTACCTCAATTGGAACCTATTTCATTTTGCTGGAAAGCATATCCTTTTAGATGGGGGCCTACTCTATAACCTTTTTGGCATACATACAAGTCTGTGGTTGGAGGACAGTTGTGGAAAAATTGTTCTTCCGAGGGGCCCTAATGATTTTGGTTGGGATCCAATTTTCCAACCTGATGGCTGTGACCAAACGTATGCTGAATTGTCCAAGGAAGAAAAGAACAAGATATCTCATCGCTACCGTGCTCTTGCACTCGTGAAATCTCACTTTGCTGAAGCTAATTACACCTACCAGATCGAAGACTAA 771 42.8 MATRIGLMLPRPVTFVTGNAKKLEEVRAILGNSVPFRSLKLDLPELQGEPEDISKEKARLAAIQVHFLLHFCHSIKNQNKRELTDLELPGFVIGRAIHVSCYIINVPSEVKFCLLCLNNLLMAYEDKSAYASCIFSFSLGPESEPITFVGKTPLFSYLNWNLFHFAGKHILLDGGLLYNLFGIHTSLWLEDSCGKIVLPRGPNDFGWDPIFQPDGCDQTYAELSKEEKNKISHRYRALALVKSHFAEANYTYQIED 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25355670 25359094 + Lsi05G018110.1 Lsi05g01811 664303

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01811 256 PANTHER INOSINE TRIPHOSPHATE PYROPHOSPHATASE/HAM1 PROTEIN 8 152 IPR002637 GO:0009143|GO:0047429
Lsi05g01811 256 PANTHER INOSINE TRIPHOSPHATE PYROPHOSPHATASE/HAM1 PROTEIN 193 253 IPR002637 GO:0009143|GO:0047429
Lsi05g01811 256 CDD HAM1 13 244 IPR002637 GO:0009143|GO:0047429
Lsi05g01811 256 Pfam Ham1 family 13 152 IPR002637 GO:0009143|GO:0047429
Lsi05g01811 256 Pfam Ham1 family 193 242 IPR002637 GO:0009143|GO:0047429
Lsi05g01811 256 Gene3D - 6 248 IPR029001 -
Lsi05g01811 256 SUPERFAMILY ITPase-like 8 152 IPR029001 -
Lsi05g01811 256 SUPERFAMILY ITPase-like 193 247 IPR029001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01811 K01519 rdgB, ITPA; XTP/dITP diphosphohydrolase [EC:3.6.1.66] - csv:101218429 275.789
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g843 . . . . . . . . . . . Cma14g01871 . Car14g01673 . . Cpe03g01569 Bhi01g00003 . . . . . . . . . . . . . Cone14ag0209 Cone15ag0230 . . Lsi05g01811 . . Cme06g00411 . Blo07g00295 Bda11g00658 . . Bpe13g00533 . Bma06g01624 . . Cmo14g01917 . . . . . . . . . . . . . Cla05g00373 Cam05g0406 Cec05g0411 Cco05g0411 Clacu05g0401 Cmu05g0386 Cre05g0448 . Csa03g01129 Chy06g00396 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007514 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 35