Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01813 ATGGAAAGTCTTGATATTTTCCAATTTCGAAGGCTCTTCAATCTATCGAATGGAGCAACTGAGAAGTTGCAAAGCTCAAGCAACTCATCAATGGCAGTGAGGTTGGACGAGGCTGAGGCTCTTGGTAATGAGCATGCTGTGGACAACCCAGAAGAGATCGCTGCTATGGTTGACATATTAGGCTCAACGGCCCTGAAGCAGGTCTTCAGGAATCAATTTTTTAAGGAAATTTGGGTAAACCTGTCCAATCTGACCAAATTTTACAAAACCCACCTAAAAAGGATCGCTATTAATATGCACATGGCTACTTTCCTGTTCTTCACCGTCAGATTTTCGGATCTTGTTATCCCGTCCATGTGCACTTGTAAAACGAGGCAAATGAAGTTTAAGTTGATTTGGACGAGTTTTTGCAAGTGGCAACTGCCCTTGAGTGGCCCAATAGGCGACAAGGACCCGAAAAAAAATGCCACCAAATTTTCACCCATCAAACTGAATATTAAAACAATATACTTGATCAGGAGTATCCGCAATGCCACTGCGAGGAGGGAGCTTGGCTTCTTCTCTTGTGGAACCGGCAATCCTATTGATGACTGCTGGCGTTGTGATCCCAATTGGCAACAGAACCGCAAACGTCTGGCAGATTGTGGCATTGGCTTTGGCCGGAATGCCATTGGTGGTCGTGACGGTCGATTCTACGTCGTCACTGACTCTGGCGATGACAACCCTGTCAATCCAAAGCCTGGCACTTTGCGACATGCCGTTATCCAGGATGAACCTCTATGGATTGTGTTCAAGAGAGACATGGTGATTCAGCTGAAACAAGAGCTGATTATGAACAGTTTCAAGACAATTGATGCCCGTGGGACCAATGTTCACATTGCTAATGGTGCTTGCATCACAATCCAGTTTGTGACCAATGTTATTGTCCATGGTCTAAACATCCATGACTGCAAGCCCACTGGAAACGCCATGGTAAGGAGCTCACCCAATCACGTTGGGTGGAGAACAATGGCTGATGGTGATGCCATTTCCATTTTTGGATCAAGTCATATTTGGATCGATCATAATTCACTCTCTAATTGTGCTGATGGCCTCGTTGATGCTGTCATGGGATCCACTGCAATTACCATTACCAACAATTACTTCACCCACCACAATGAGGTATCTCCACTTCATCCATATACTCAAGACATCGCATCACATTCTGTGTCTAATGAACAGGTTATGTTATTGGGACATAGTGATTCTTACGTTAGAGATAAACTAATGCAAGTGACCATTGCTTACAATCACTTTGGAGAAGGACTCATCCAAAGAATGCCAAGGTGTAGACACGGATACTTCCATGTGGTGAACAATGATTATACTCACTGGGAGATGTACGCCATTGGTGGAAGTGCAAATCCAACCATCAATAGTCAGGGTAACAGATATGCTGCTCCAACCAACCCTTTTGCTAAAGAGGTGACAAAAAGAGTTGAGACAGCTGAAACTGAGTGGAAAAACTGGAATTGGAGATCAGAGGGAGACCTATTGTTGAATGGTGCCTTCTTCACTCCATCTGGTGCAGGGGCCTCAGCAAGCTATGCTAGAGCCTCAAGCTTGGGAGCTAAATCTTCATCCATGGTTGGTACTATAACATCCAATGCCGGTGCACTTTCCTGCCGGAGAGGCCATCCGTGCTAG 1686 45.08 MESLDIFQFRRLFNLSNGATEKLQSSSNSSMAVRLDEAEALGNEHAVDNPEEIAAMVDILGSTALKQVFRNQFFKEIWVNLSNLTKFYKTHLKRIAINMHMATFLFFTVRFSDLVIPSMCTCKTRQMKFKLIWTSFCKWQLPLSGPIGDKDPKKNATKFSPIKLNIKTIYLIRSIRNATARRELGFFSCGTGNPIDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDNPVNPKPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACITIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITITNNYFTHHNEVSPLHPYTQDIASHSVSNEQVMLLGHSDSYVRDKLMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAETEWKNWNWRSEGDLLLNGAFFTPSGAGASASYARASSLGAKSSSMVGTITSNAGALSCRRGHPC 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25363141 25367601 - Lsi05G018130.1 Lsi05g01813 664305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01813 561 PRINTS Pollen allergen Amb family signature 503 527 IPR018082 -
Lsi05g01813 561 PRINTS Pollen allergen Amb family signature 532 555 IPR018082 -
Lsi05g01813 561 PRINTS Pollen allergen Amb family signature 461 480 IPR018082 -
Lsi05g01813 561 PRINTS Pollen allergen Amb family signature 215 232 IPR018082 -
Lsi05g01813 561 PRINTS Pollen allergen Amb family signature 439 458 IPR018082 -
Lsi05g01813 561 PANTHER PECTATE LYASE 405 558 - -
Lsi05g01813 561 PANTHER PECTATE LYASE 175 389 - -
Lsi05g01813 561 SUPERFAMILY Pectin lyase-like 177 556 IPR011050 -
Lsi05g01813 561 SMART amb_all 267 484 IPR002022 -
Lsi05g01813 561 Pfam Pectate lyase 278 476 IPR002022 -
Lsi05g01813 561 Gene3D - 192 554 IPR012334 -
Lsi05g01813 561 PANTHER PECTATE LYASE 18-RELATED 405 558 IPR045032 GO:0030570
Lsi05g01813 561 PANTHER PECTATE LYASE 18-RELATED 175 389 IPR045032 GO:0030570
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi05g01813 Lsi09g01161 CCT
Lsi05g01813 Lsi09g01161 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01813 Lsi-Chr5:25363141 Lsi08g01628 Lsi-Chr8:24200656 0 dispersed
Lsi02g00456 Lsi-Chr2:3822873 Lsi05g01813 Lsi-Chr5:25363141 0 transposed
Lsi05g01093 Lsi-Chr5:18683540 Lsi05g01813 Lsi-Chr5:25363141 0 wgd
Lsi05g01813 Lsi-Chr5:25363141 Lsi09g01161 Lsi-Chr9:18677108 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01813 K01728 - csv:101218188 737.258