Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01818 ATGCAATCGGCAATCATATCTCCTTCACCACACGTCATCCCCTTCATCACAATTACACCATCTGTCTCTACTAATGTCCAACGAAGCCGTCCCCTCGTCGTCAGAGCTTCGATTTCTAATGCAACTACGCAATCTCCACCGCCGCCGGTGTCTGTAGACTCTCCTTCTCCCAGTTCCTCTACCGCTCAAAAGCTCAACAAGTACAGCGCTCGCATTACCGAGCCGAAGTCCCAGGGTGGCTCTCAGGCGATTCTCCACGGCGTTGGTCTATCCGACGACGATCTCAACAAGCCTCAGATTGGGATTTCGTCAGTCTGGTACGAGGGAAATACATGCAATATGCACCTGTTGAAGCTCTCTGAGGCTGTTAAATACGGGGTTAATGCGGCCGGCATGGTTGGCTTTAGGTTCAACACGATTGGCGTTAGTGATGCCATTTCCATGGGGACCAGAGGTATGTGCTATAGCTTGCAGTCAAGGGACTTGATTGCGGATAGCATCGAGACTGTCATGAGTGCTCAGTGGTACGACGGGAATATCTCCATCCCTGGCTGTGATAAGAATATGCCAGGTACAATAATGGCGATGGGTAGGCTGAACCGACCAAGTATTATGGTTTATGGTGGAACCATCAAGCCCGGTCATTTTCAAGGCCATACATATGACATAGTGTCTGCATTTCAGGTATATGGAGAATATGTAAGCGGGTCAATAAGTGATGAAGAGAGGAGGAATGTTGTCCGCAACTCATGCCCGGGGGCTGGGGCTTGTGGTGGGATGTATACAGCTAATACAATGGCATCTGCTATCGAAGCTATGGGCATGTCTCTTCCTTACAGCTCATCAACACCGGCTGAGGATCCACTGAAGATTGACGAATGCCGTTTAGCTGGAAAATATCTTTTGGAACTATTGAAGATGGATTTGAAACCACGAGATATTATTACGGAAAAATCACTACGAAATGCAATGGTTGTTGTTATGGCTCTGGGTGGTTCCACTAATGCAGTGCTACACTTGATTGCTATAGCGAGGTCTGTTGGTTTGGATTTAACCCTTGATGATTTTCAGAAGGTCAGCGATCAGGTTCCTTTACTTGCCGATCTTAAGCCTAGTGGAAAATATGTAATGGAGGACATTCACAAGATTGGAGGAACACCTGCAGTCATTCGCTATCTGTTGGAGCACGGACTTTTAGATGGAGATTGTATAACCGTCACGGGAAAGACGCTGGGCGAAAATGCTAAACTTTTCCTACCTCTATCTGAAGGGCAGGATATTATCAAACCTTTGGAGAATCCCATCAAGAAAACAGGGCACCTTCAAATATTATATGGAAATCTTGCTCCTGAGGGTTCAGTAGCTAAGATTACTGGCAAGGAGGGGCTATATTTCTCTGGTCCTGCTCTTGTTTTTGAAGGTGAAGAATCGATGATTGCAGCTATAACAAAGGACCCCTCAAGTTTTAAGGGGAGAACAGTGATCATTAGGGGTGAAGGCCCTAAAGGAGGACCGGGAATGCCTGAAATGTTAACACCGACTAGTGCAATAATGGGGGCAGGTCTGGGGAAGGAAGTGGCATTGCTGACTGATGGTAGGTTCTCTGGAGGTTCACACGGCTTCGTGGTCGGTCACATCTGCCCCGAAGCATTGGATGGTGGTCCAATCGGGTTGGTTCAAAATGGCGATATCATCAATGTTGATGTCCAAAACCGGAGAATCGATGTTCTATTATCTGATCAAGAGATGGAAGAACGAAGAAAGAACTGGATTCCACCTGCATACAAGGCTACTAGAGGTGTTCTTCACAAGCCGGTGCGACCCGACCCGGCTTGTAGCGGGGAACGGAGAGACGGTGGGTTTAGAGAAGGGGAGAAAGAGAATGGAGGTGATTGGATGGCCTCACCATCGTCTTCTTCGTCGTACTTGAATTCAACCTGTGGGCTTCTCGCTATTCTGGATTTGGACGAGAAACACGACGAGAGTATGAAGGAGATGGAGACTGAATGGATCATGGACGTACCTGATACACCTGATCGGTTAGCTGCCCGACAAATTAATAGCGGACAGTTTATTCGAACGGAGACTGGTTCTTCTTTATCTAATCGTTTGAGAAACCCTGATTTCATGATGGAAAAGTGTATGAATGGCATGAAGGGAGTGGATGTGCTTGCCAGTGAAAATGGGCATGATTTGAGATTAGATAGGAGTTCCAAAACTATTCCTGGTGAGGATTTTAAGGGTCGTAAAAATACCATTATTCTTTCACCCAGAGAGAATTCTTATGCATTGCAAAATAATCTTTTACTTAGAAAAGGTGGAAGGGAAAAATATTCATGTCAGGGGCCAAAACGTTTTATTTGCCCTCGCCGTGTGGATAAAGGGATGAATATATCTGTTGACTCTCCTTCCAAACCACCTCCCTATCAAGAAAATACTGCAATTCCACAAATGAGAGAACACGATCTCAAGTATAAACCTCAAACAGTTAATCGTAATGTGGCTAAGGACTCTAAGATTGAGAACACATCAAACGAACAGTCTGCACGTTACTTGCCAATTGCTTCAAAGAAACCCAACATGAACATTAAAGGGAAGGAAAAGGTTGTTGAGGAATCATTCCAAGATGTTGGTTTATCCATGATTCATAGAAAGGGAATTGAAAAATCCAGTAACACCAATAATCGACATGAAAAGCAAGTTTTGGGTCCTCGTCAATTTGTTGGTTCACCTAGAGCTACGGGACATAAAAGGTTGGTACGGAATGGTTGTATCTCACCTCATAATATTGCAATAAGAGCAAAAAGTTCATCTGAGCAGTGTGAAAAGAGTTCTAGAGATGTTGACGAGAGCAATTTGGGGAACAGTTCATCAAGCAGTCCATCTTGTCCGATAGATATAAATGATATAGTTACTGAAGACAATTGTACTAACAAAGATAAAGGAAAAGGGATTATGTGTCAACCTTCTATATCACATGATAATGATGATGTCAAAGTTATTTTTTCAACTAGCAGAACTACCTACTACACACTTTCTCAAAGTTGTTGCATATTGGCTTTAGCATGTTCTTCATTTTCATTTGGAGTGTGCAAAGTTCTTAGTGCCACTGTACCAGGGATTTTGAATCATATAGATTTGACTCTTCATTACACTGTACACTGTAGTGCAGTGGTTTGGCATCAGGAGGCCATGCGGCCTTCAAAAGCAATTCGTCCTGATATCTTATTTGCTTTCAGTGACACAGAAAAGGCTGTTGGAGCAAATCCAGCCAGAACTTCCAGATTAGGTACATCTGAACGTTGTGAAGAAGTAGGTGTTTGGAGGAGAACACATAATCATTCAAGGAAAGGGATTGTCTTGTCTAATCTATCTGGGAATTCTTCTAAGAAGATAGATAGTGGTGGAAGGCTTTCTAATGGAAAAACTGAGATTGTCATGGAGAGACAAATCCCTAGCAGGCAAGAATTCACACCAGAAACTGATTGTCCAGGAAATGCTGATACATCTCAAAGGGCTTCTAGCACTGTACCGAAAACAGATCAGACTATTGGACTGATGCATGCTGAAGGCAAACTAAACAAAAAACAAAAGAAACATGAATCAACTTCACAAATTAATACATGCCGCAGTCCAGATGTCGTGTACCTTGGTACATCTGGGGAGTCTTCAAATTCAAGGTCAACTAGACTGCAGAGTCAACGAATTTGTGACAATTTGAGTGAAGTTATTGAGGTTGATGAGTTGTCACCTGAAATGAGACACCCTGTCTCCCAGAATGTTGGTAGCTTAAATGATGACAACTCAGATGTCAGGGCAAGACAACTTGAAGCTGACGAGATATTGGCTCGTGAACTTCAGGAACAACTATATCAGGAGATGCCTATTGGAGGAGAAGAGATTGATGAACATTTAGCTATGGCACTCCAGCAGGTGGAACATGGCCTTCTTGCACCCTCCCGCCGGACTTACAATAGTCAGAGGGGCTCGTTGGTTGCACAGGCTAACAGACGCACTCGTTCTCAATCTTTACAAAACTCTTCTAATAGAATGCGGACTCGAGTAACCCACTCTGCACGAATGGCACAGATAAGGAATCAATTTTTTGGTGGCTCTCATAGAGTGTCAACTAGACAAAGGAATGTTAATTTTCCTATGCATATGGATTTAGATATGAGACTTGATATATTGGAAGCTCTGGAGGCTGCAGTTGGAGATATGGAAGATGTGAGAATGAACAGGGACATCTTGCATATCCAGCGTGATTTCAACGAGAATGATTATGAGATGCTGCTATCTCTTGATGAGAACAATCACCGCCATGCCGGTGCATCTACCAACCGGATTAATAGTTTGCCACAATCTACTGTACAGGTAGGTGGTAGTTCTGCTTCCCGTTTCCGACTGACAGCATGGAAGAAGCTTGTGCAATTTGTCTCGATACACCAACCATTGGAGATGTCATACGCCATCTACCTTGTTTACACAAATTTCATAAAGACTGTATCGATCCATGGCTACAGAGACGAACATCGTGCCCAGTTTGTAAGTGCTCAATCACTTGATACTAAGGGTGATTTCGGGCTTATTACAAATCTGCACGCCCTCTTACTCTTTTGTGGAGCCAAGGTAAATTAG 4638 43.79 MQSAIISPSPHVIPFITITPSVSTNVQRSRPLVVRASISNATTQSPPPPVSVDSPSPSSSTAQKLNKYSARITEPKSQGGSQAILHGVGLSDDDLNKPQIGISSVWYEGNTCNMHLLKLSEAVKYGVNAAGMVGFRFNTIGVSDAISMGTRGMCYSLQSRDLIADSIETVMSAQWYDGNISIPGCDKNMPGTIMAMGRLNRPSIMVYGGTIKPGHFQGHTYDIVSAFQVYGEYVSGSISDEERRNVVRNSCPGAGACGGMYTANTMASAIEAMGMSLPYSSSTPAEDPLKIDECRLAGKYLLELLKMDLKPRDIITEKSLRNAMVVVMALGGSTNAVLHLIAIARSVGLDLTLDDFQKVSDQVPLLADLKPSGKYVMEDIHKIGGTPAVIRYLLEHGLLDGDCITVTGKTLGENAKLFLPLSEGQDIIKPLENPIKKTGHLQILYGNLAPEGSVAKITGKEGLYFSGPALVFEGEESMIAAITKDPSSFKGRTVIIRGEGPKGGPGMPEMLTPTSAIMGAGLGKEVALLTDGRFSGGSHGFVVGHICPEALDGGPIGLVQNGDIINVDVQNRRIDVLLSDQEMEERRKNWIPPAYKATRGVLHKPVRPDPACSGERRDGGFREGEKENGGDWMASPSSSSSYLNSTCGLLAILDLDEKHDESMKEMETEWIMDVPDTPDRLAARQINSGQFIRTETGSSLSNRLRNPDFMMEKCMNGMKGVDVLASENGHDLRLDRSSKTIPGEDFKGRKNTIILSPRENSYALQNNLLLRKGGREKYSCQGPKRFICPRRVDKGMNISVDSPSKPPPYQENTAIPQMREHDLKYKPQTVNRNVAKDSKIENTSNEQSARYLPIASKKPNMNIKGKEKVVEESFQDVGLSMIHRKGIEKSSNTNNRHEKQVLGPRQFVGSPRATGHKRLVRNGCISPHNIAIRAKSSSEQCEKSSRDVDESNLGNSSSSSPSCPIDINDIVTEDNCTNKDKGKGIMCQPSISHDNDDVKVIFSTSRTTYYTLSQSCCILALACSSFSFGVCKVLSATVPGILNHIDLTLHYTVHCSAVVWHQEAMRPSKAIRPDILFAFSDTEKAVGANPARTSRLGTSERCEEVGVWRRTHNHSRKGIVLSNLSGNSSKKIDSGGRLSNGKTEIVMERQIPSRQEFTPETDCPGNADTSQRASSTVPKTDQTIGLMHAEGKLNKKQKKHESTSQINTCRSPDVVYLGTSGESSNSRSTRLQSQRICDNLSEVIEVDELSPEMRHPVSQNVGSLNDDNSDVRARQLEADEILARELQEQLYQEMPIGGEEIDEHLAMALQQVEHGLLAPSRRTYNSQRGSLVAQANRRTRSQSLQNSSNRMRTRVTHSARMAQIRNQFFGGSHRVSTRQRNVNFPMHMDLDMRLDILEALEAAVGDMEDVRMNRDILHIQRDFNENDYEMLLSLDENNHRHAGASTNRINSLPQSTVQVGGSSASRFRLTAWKKLVQFVSIHQPLEMSYAIYLVYTNFIKTVSIHGYRDEHRAQFVSAQSLDTKGDFGLITNLHALLLFCGAKVN 1545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25425282 25444556 - Lsi05G018180.1 Lsi05g01818 664310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01818 1545 PANTHER DIHYDROXY-ACID DEHYDRATASE DAD 40 607 - -
Lsi05g01818 1545 SUPERFAMILY LeuD/IlvD-like 441 603 - -
Lsi05g01818 1545 Pfam Dehydratase family 97 603 IPR000581 GO:0016836
Lsi05g01818 1545 MobiDBLite consensus disorder prediction 889 913 - -
Lsi05g01818 1545 MobiDBLite consensus disorder prediction 1154 1182 - -
Lsi05g01818 1545 PANTHER BNAA01G23200D PROTEIN 40 607 - -
Lsi05g01818 1545 Hamap Dihydroxy-acid dehydratase [ilvD]. 67 619 IPR004404 GO:0004160|GO:0009082
Lsi05g01818 1545 MobiDBLite consensus disorder prediction 605 639 - -
Lsi05g01818 1545 MobiDBLite consensus disorder prediction 1329 1355 - -
Lsi05g01818 1545 MobiDBLite consensus disorder prediction 1152 1185 - -
Lsi05g01818 1545 ProSitePatterns Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 527 538 IPR020558 GO:0003824
Lsi05g01818 1545 MobiDBLite consensus disorder prediction 950 965 - -
Lsi05g01818 1545 ProSitePatterns Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 185 195 IPR020558 GO:0003824
Lsi05g01818 1545 Gene3D - 440 590 IPR042096 -
Lsi05g01818 1545 SUPERFAMILY IlvD/EDD N-terminal domain-like 60 439 IPR037237 -
Lsi05g01818 1545 TIGRFAM ilvD: dihydroxy-acid dehydratase 81 604 IPR004404 GO:0004160|GO:0009082
Lsi05g01818 1545 MobiDBLite consensus disorder prediction 935 965 - -
Lsi05g01818 1545 MobiDBLite consensus disorder prediction 609 629 - -
Lsi05g01818 1545 MobiDBLite consensus disorder prediction 39 66 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01818 K01687 ilvD; dihydroxy-acid dehydratase [EC:4.2.1.9] - csv:101217323 1131.7
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g856 . . . . . Bpe14g01298 . . . . . Cma14g01878 . Car14g01680 . Cpe08g00384 Cpe03g01575 . . . . . . . . . . . . . . Cone14ag0212 Cone15ag0233 . . Lsi05g01818 . . . . . . . . . . . . . Cmo14g01926 . . . . . . . . . . . . . . . . . . . . . Csa03g01121 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007213 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 2 1 1 1 2 1 37