Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01820 ATGGCTGGTATCGATGTTTCGAAGTATGCACATAGCCCTGTACACAAGGCTGTGGCAACCAGGGACTATTCCAATCTCAAGAGAATCCTTGCAGGCCTTCCACGGCTTTGTAATCCATCTGAGATTCGCACCGAGGCTGCTTCATTAGCTGAGGAAAACAAGGCTGATGCCATTTCTGCCCTGGTTGATCGTCGAGATGTTCCAAATCGGGATACTCCACTGCATTTGGCTGTAAAGCTCGGGGATGAGACTGCTACCGAAATGCTTATGGTTGCAGGGGCAGATTGGAGCTTGCAGAACGAGCATGGTTGGAGTGCACTTCAGGAAGCAATTTGCAGTAGACAAGAAGGGATTGCTATGATAATAGTCCGGCATTACCAGCCATTGGCTTGGGCAAAATGGTGTCGGAGATTGCCTCGCTTGATTGAGACTATGCGAAGAATGAGGGATTTTTACATGGAAATCACATTCCACTTTGAGAGTTCGGTGATCCCTTTCATTTCTAGGATTGCTCCTTCAGATACATACAAGATCTGGAAAAGAGGTGCTAACTTGAGGGCAGATATGACACTGGCTGGTTTTGATGGATTTAGGATCCAACGTGCCGACCAGAGCATTCTTTTTCTTGGCGATGGGACAGAGGATGGGAAAGTACCTTCTGGTTCACTCTGTATGATCTCACACAAGGAGAAGGAGGTAATGAATGCTTTGGATGGTGCTGGTGCTCAGGCAACTGAAGAAGAGATTAGACAAGAAGTGACAGCAATGTCTCAGACTAATATATTTAGACCTGGAATTGATGTCACTCAGGCCGTTCTTTTGCCTCAGTTGACTTGGAGGCGCCAGGAGAAAACTGAATTGGTGGGTGCCTGGAAGGCTAAAGTATATGATATGCATAATGTGGTTGTTAGTATCAAATCCAGGAGGGTCCCTGGGGCGATGACAGATGACGAATTCTTCTCCTCGTGCAATGAAAATGAAGCTGAGAGTGAGGAGTTTGATGATATTTTAACTGAGGATGAACGAAAGCAACTTGAGAATGCACTTAAATTAGATTCATCTGAATTAGCTTCTGAGAATGGTGATGGGATTGTTGCGCATCGGCACAGTTGTTTTGAGCAGAGGGAAGTTCCTGTTGAGGATGTAAATGGATGTAGAAATGAAGAGATTCGACAGGAAAAGAAAGGATGGTTTGGGGGATGGAGGAAACGGGATAACAAAAATGAAGGGCAAAAGAAGATTGCTCCTCCAAGAAGCTCCCTTTCTATGGATGATAAGGTAGGTGATCTTCTGGGGGACTGTCCTCCTGAAAATCATAGCAGCAGGCCTGGAAGACATTCTGTAGAGATAGTCTCTGAACACCGAAGAGGAAGGGAAAACAGAACTACCTCGACGTCTGAAAGCAAAAATCGCCACAAGGATGGGAGTCACGAAAATGAGTACAAGAAAGGGTTGAGACCCGTTCTTTGGCTTTCTCCGAACTTTCCTCTACAAACTGAAGAACTATTGCCATTGCTGGATATTTTAGCTAACAAGGTCAAGGCAGTTCGGCGTTTGAGGGAACTGCTTACCACGAAGCTCCCATTGGGAACCTTTCCGGTCAAGGTTGCCATCCCTGTGGTTCCAACCATCAGAGTGATTGTTACCTTCACAAAGTATGAAGAACTACAGCCAGTGGACGAGTTCGCAACGCCACCGTCAAGCCCTACGGCTGCAGCAGGCAGGGAGAGCCCTTCCACAGCAAATTCCTTGAGTTCATCTTGGTTTCAATGGATAAAAGCCCCGTATCAACGCCCGAGCACATCGACCAGTGTTTCTAGCAGTAGGATAGAAACTCTCGAAGACCCATTTGTCATCCCCCGCAATTACACCTGGGTTACCGCAGAAGCAAAGAAAAAGAAGATGCAGGAAAAGAACAAAGCAAAGAAAGGAAGAAGTCGCCGCGATTGA 1950 46.41 MAGIDVSKYAHSPVHKAVATRDYSNLKRILAGLPRLCNPSEIRTEAASLAEENKADAISALVDRRDVPNRDTPLHLAVKLGDETATEMLMVAGADWSLQNEHGWSALQEAICSRQEGIAMIIVRHYQPLAWAKWCRRLPRLIETMRRMRDFYMEITFHFESSVIPFISRIAPSDTYKIWKRGANLRADMTLAGFDGFRIQRADQSILFLGDGTEDGKVPSGSLCMISHKEKEVMNALDGAGAQATEEEIRQEVTAMSQTNIFRPGIDVTQAVLLPQLTWRRQEKTELVGAWKAKVYDMHNVVVSIKSRRVPGAMTDDEFFSSCNENEAESEEFDDILTEDERKQLENALKLDSSELASENGDGIVAHRHSCFEQREVPVEDVNGCRNEEIRQEKKGWFGGWRKRDNKNEGQKKIAPPRSSLSMDDKVGDLLGDCPPENHSSRPGRHSVEIVSEHRRGRENRTTSTSESKNRHKDGSHENEYKKGLRPVLWLSPNFPLQTEELLPLLDILANKVKAVRRLRELLTTKLPLGTFPVKVAIPVVPTIRVIVTFTKYEELQPVDEFATPPSSPTAAAGRESPSTANSLSSSWFQWIKAPYQRPSTSTSVSSSRIETLEDPFVIPRNYTWVTAEAKKKKMQEKNKAKKGRSRRD 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25486110 25490828 + Lsi05G018200.1 Lsi05g01820 664312

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01820 649 MobiDBLite consensus disorder prediction 400 480 - -
Lsi05g01820 649 Gene3D - 2 141 IPR036770 -
Lsi05g01820 649 MobiDBLite consensus disorder prediction 439 480 - -
Lsi05g01820 649 SMART ANK_2a 102 131 IPR002110 GO:0005515
Lsi05g01820 649 SMART ANK_2a 9 38 IPR002110 GO:0005515
Lsi05g01820 649 SMART ANK_2a 69 98 IPR002110 GO:0005515
Lsi05g01820 649 Pfam GPCR-chaperone 186 624 IPR021832 -
Lsi05g01820 649 PANTHER BNAA08G28070D PROTEIN 3 647 - -
Lsi05g01820 649 ProSiteProfiles Ankyrin repeat region circular profile. 69 101 - -
Lsi05g01820 649 ProSiteProfiles Ankyrin repeat profile. 69 101 IPR002110 GO:0005515
Lsi05g01820 649 MobiDBLite consensus disorder prediction 629 649 - -
Lsi05g01820 649 SUPERFAMILY Ankyrin repeat 53 128 IPR036770 -
Lsi05g01820 649 PANTHER UNCHARACTERIZED WITH ANKYRIN REPEAT DOMAIN 3 647 IPR021832 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01820 K21437 ANKRD13; ankyrin repeat domain-containing protein 13 - csv:101217083 1211.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00431 Lsi-Chr1:3625747 Lsi05g01820 Lsi-Chr5:25486110 4.87E-175 dispersed
Lsi05g01820 Lsi-Chr5:25486110 Lsi11g00884 Lsi-Chr11:11686257 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g882 . . . . . . . . . . Cma06g01259 Cma14g01914 Car06g01082 Car14g01683 . Cpe08g00386 Cpe03g01613 . . . . . . . . . . . . . . . . . . Lsi05g01820 . . . . Blo07g00297 Bda11g00660 . . . Bma02g00733 Bma06g01627 . Cmo06g01269 Cmo14g01968 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000559 4 5 4 4 3 3 5 3 3 3 3 3 5 3 3 5 3 4 5 3 3 3 3 4 3 3 2 7 4 1 107