Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01829 ATGTCTCAACTAAAAGGTGAACGGAAGTTTGCTTGGAAAAAATGGTCATCGGAATATTGCCTTTTATCTCCTCCGTTTGTGGTCAATACGGCTTCACAGATTCTCTCCAGGATGGAATTCTGCAATTCCTTCATCTTCTTCACTCTGCTAATCATCCTCCCTCTCGCTAGGTGCGAGGATACTGGCTCGGTGCTCTTCGTTGATAGCTCGTCGCATCAATATCTTCGATCTCATTCGCCCGATGATGGCTTTGAGGTTAGTTCAATGTCACTACCAGAAGTTGGTGCTGCTGTGTCAGTCTTGCTCGGTTTTGCGCCACCTTCAACGCTTTCAGCTTCTGGATCATCTAAGCTGAATGGGATTTTGATGCCAAATCCGCTTGATAGGCCTCGTTCAGTTTTTATGCTTGAAATTAAAGGAGAATATGGTCTCTGCAACCCTGAAATTTTAAGCCTGGAAGGTGGCATGTCCAGCAATGTTCTTACGAGCAAGGTTCATGTAGGTTCTGAGAGTGCTGATATCCAACTTCCTGGTGAGGATGAAGTGTCTGTTGTTCCTTTGAATGAACCATTGCCAGATTATACAGATGAAGATGTTAGAGAATTTGCATCTTTCATCGGTGGATCATATATTGCTGATGCATCAAAAACTTTAAGTGGAGAGTTTACTGTGCGCTTGACTGATGATGTTAAGATCAATCTTCATATGTCTAAGACGGGGGACAGAGAATTTATAGGTAGTCTTTTGTGTCTCTTTCACAATATTAAGAGGGCTATTCACATTCATGAGGATTTGTCACAAAATGTGCAAAGTCCATCTGAGCTCATTACTGGCTCTTTCAATAGCATCAAGGCATTCCAAGATGAAAGTGATTCTGAAGGAGATGCTGATCATAGATCGAGACTATTTGTGGTTGCTTTGTCCAAGATATTCCACTTGCTCCAAAAAGCATATGATGGTCAAATTGTTGGAGTTGTTTTCTTTTCTGGATCATCATCACCAAAGGCAGAAAAGGGATTAAATGTGATGTTTAACCCTCGGTTGACTCCACGTTGGTTGGTGGAAGAAGTCAAAGTTAACACAACTATTCAAGAAGTAATATTGGTTAGGACAACCCTTGCCTGGCTCACAGGAATCATCCTTTTGATTGCTACTCTTATGGGGGTAAATTTTGCACCTGTACTCCATTTTGCTCCATCAAGTTTAAATATTCTGAGATTTTCCCCATCGGAAAAATATCTTCTCAAAGTCTCTACGTTCTTCCATTTCTCCTCTTTCTTCCACACTCTCCTTCAATTTCTCCGCTGCATTTCAATGTCTTCCTCCATTACTCTTCCTCTCAATCCTTCTCTTCATCTCACTCCTCGCCTCTTCTCTCTCTCAGTCTTCTCATCTCCCAAGCTCTCATCATCTCGTTCTCTTCCCAATTCATTCATCTGTTGCTCTCTGAATCCCGCTAGCAATGACCGCGAGGAGCTCCGATGGCTCCGCGAGGAGCAGCGGTGGTTTCGCGAAGAGGAACGGTGGATCCGCGAAGAGCAGCGTTGGGCCAGAGAACGCCAGTCACTTCTGCAGGAAATTGCTGAACTTAAGCTGCAAATTCAAGCTTTAGAACGCCGAAATTCCGTTCAAGGAGGGACGGTTTCTGTATCAGAGACTATTGCGAATATCGCCGGTCTGTTGCAGGTCTTGAAGGAGAAGAATCTGATTGCCGAGAGCGGGCCGACGGTGAGTCGCATTTTGTTGGATGAGAGTACTCGTGAAGAGGACGTGGAGGTAGAGAAGAAGTCAATTGTTGAAGAAGTCGTTACGTTTCCCGAAGAAAGTAAGGCGGAGAAAGAGGTGAAGAAGGAGAGAAAGTCTTTGAGAATTGGTTCGGAAGGAGCGGAAGTCCTAGCGATGCAGGAAGCATTGCTGATGCTAGGATTTTACTCTGGTGAAGAAGACATGGAATTTTCAAGTTTCTCCAGTGGAACTGAGCGTGCAGTTAAGACTTGGCAGGCCGCCTCGGGTTTCCGTGAAGATGGTATAATGACTGCAGACCTTCTTGAGATTTTATACAAGGAGAAAATAACTGAGAGTGTTGGATCAGATGCCAAAACAGATGAAAAAGGGAATATTCCAACAGATCAGAAAAAAACAGTAGTAAAAGAAGGCAGTGTAAGTTTTGATGTTTCCCAACAGCGAGTTTTTCTCATTGGAGAGAACCGATGGGAAGACCCCACACGACTTCATAGTTCAAATGGAAAAGCTTCTGATGGCAAAACCAAAGACATATCTACCAAGTGTCTGACTTGTCGTGGGGAGGGTCGTCTGTTATGCTCAGAATGCGACGGAAGTGGTGAGCCAAATATTGAACCACAGTTTCTGGAATGGGTGGATGAAGGAACAAAATGTCCATATTGCGAAGGCGTTGGTTATACAATATGCGACGCATGCGAAGGGAGGACAGTGACGTAG 2460 44.15 MSQLKGERKFAWKKWSSEYCLLSPPFVVNTASQILSRMEFCNSFIFFTLLIILPLARCEDTGSVLFVDSSSHQYLRSHSPDDGFEVSSMSLPEVGAAVSVLLGFAPPSTLSASGSSKLNGILMPNPLDRPRSVFMLEIKGEYGLCNPEILSLEGGMSSNVLTSKVHVGSESADIQLPGEDEVSVVPLNEPLPDYTDEDVREFASFIGGSYIADASKTLSGEFTVRLTDDVKINLHMSKTGDREFIGSLLCLFHNIKRAIHIHEDLSQNVQSPSELITGSFNSIKAFQDESDSEGDADHRSRLFVVALSKIFHLLQKAYDGQIVGVVFFSGSSSPKAEKGLNVMFNPRLTPRWLVEEVKVNTTIQEVILVRTTLAWLTGIILLIATLMGVNFAPVLHFAPSSLNILRFSPSEKYLLKVSTFFHFSSFFHTLLQFLRCISMSSSITLPLNPSLHLTPRLFSLSVFSSPKLSSSRSLPNSFICCSLNPASNDREELRWLREEQRWFREEERWIREEQRWARERQSLLQEIAELKLQIQALERRNSVQGGTVSVSETIANIAGLLQVLKEKNLIAESGPTVSRILLDESTREEDVEVEKKSIVEEVVTFPEESKAEKEVKKERKSLRIGSEGAEVLAMQEALLMLGFYSGEEDMEFSSFSSGTERAVKTWQAASGFREDGIMTADLLEILYKEKITESVGSDAKTDEKGNIPTDQKKTVVKEGSVSFDVSQQRVFLIGENRWEDPTRLHSSNGKASDGKTKDISTKCLTCRGEGRLLCSECDGSGEPNIEPQFLEWVDEGTKCPYCEGVGYTICDACEGRTVT 819
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25559297 25571269 - Lsi05G018290.1 Lsi05g01829 664321

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01829 819 SUPERFAMILY PGBD-like 620 686 IPR036365 -
Lsi05g01829 819 Coils Coil 513 540 - -
Lsi05g01829 819 Pfam Putative peptidoglycan binding domain 628 686 IPR002477 -
Lsi05g01829 819 Gene3D - 618 688 IPR036366 -
Lsi05g01829 819 PANTHER OS08G0567000 PROTEIN 41 391 - -
Lsi05g01829 819 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 759 817 IPR036410 -
Lsi05g01829 819 PANTHER OS08G0567000 PROTEIN 41 391 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01829 K22519 PTAC5; protein disulfide-isomerase [EC:5.3.4.1] - csv:101215886 594.349
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01829 Lsi-Chr5:25559297 Lsi11g00317 Lsi-Chr11:3267087 2.89E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g890 . . . . . . . . . . Cma06g01250 Cma14g01886 Car06g01074 Car14g01689 Sed02g1485 Cpe08g00393 Cpe03g01585 Bhi01g00041 Tan10g0534 Cmetu06g0221 . . . Lcy11g1765 . . . . . . . . Cone15ag0302 . . Lsi05g01829 . . Cme06g00391 . . . Bda13g00497 . . . . . Cmo06g01261 Cmo14g01936 . . . . . . . . . . . . . Cla05g00356 Cam05g0388 Cec05g0393 Cco05g0392 Clacu05g0383 Cmu05g0368 Cre05g0431 . Csa03g01107 Chy06g00377 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005305 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 1 1 40