Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01833 ATGGGTAGCGGAGAAAAGGTATTCACCTTGAAGGAAGTCGCTGAGCACAGCAATCAAAAGGACTGTTGGCTCATCATCAGTGGCAAGGTATATGATGTGACCAAGTTCTTAGAAGACCATCCTGGTGGTGACGATGTTTTGTTGTCGGCTACAGGAAAAGACGCAACCGACGACTTTGAAGACGTTGGGCACAGTGACAACGCAAGAGAAATGATGGATCAATACTATGTTGGGGAGATTGATGCTTCAACAATTCCAAAGAAGGTCGCATATACGCCTCCAAAACAGCCTCATTACAATCAGGACAAGACATCCGAGTTCATCATCAAGCTTCTCCAATTCCTCGTCCCGCTTGCAATTTTGGGATTGGCAGTCGCCATACGCTTCTACACCAAACAAGCTTGA 405 46.17 MGSGEKVFTLKEVAEHSNQKDCWLIISGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDVGHSDNAREMMDQYYVGEIDASTIPKKVAYTPPKQPHYNQDKTSEFIIKLLQFLVPLAILGLAVAIRFYTKQA 134
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 25617233 25621198 - Lsi05G018330.1 Lsi05g01833 664325
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01833 134 SMART Cyt_b5_2 8 81 IPR001199 -
Lsi05g01833 134 PANTHER CYTOCHROME B5 1 132 - -
Lsi05g01833 134 Gene3D - 2 86 IPR036400 -
Lsi05g01833 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Lsi05g01833 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Lsi05g01833 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Lsi05g01833 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Lsi05g01833 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 80 IPR001199 -
Lsi05g01833 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 6 90 IPR036400 -
Lsi05g01833 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Lsi05g01833 134 PANTHER CYTOCHROME B5 1 132 - -
Lsi05g01833 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01833 Lsi-Chr5:25617233 Lsi09g00003 Lsi-Chr9:27466 3.17E-68 dispersed
Lsi09g01601 Lsi-Chr9:24153292 Lsi05g01833 Lsi-Chr5:25617233 4.40E-10 dispersed
Lsi05g01118 Lsi-Chr5:18960560 Lsi05g01833 Lsi-Chr5:25617233 8.92E-68 wgd
Lsi05g01833 Lsi-Chr5:25617233 Lsi09g01152 Lsi-Chr9:18461940 3.59E-63 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01833 K23490 - csv:101214209 270.396