Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01833 ATGGGTAGCGGAGAAAAGGTATTCACCTTGAAGGAAGTCGCTGAGCACAGCAATCAAAAGGACTGTTGGCTCATCATCAGTGGCAAGGTATATGATGTGACCAAGTTCTTAGAAGACCATCCTGGTGGTGACGATGTTTTGTTGTCGGCTACAGGAAAAGACGCAACCGACGACTTTGAAGACGTTGGGCACAGTGACAACGCAAGAGAAATGATGGATCAATACTATGTTGGGGAGATTGATGCTTCAACAATTCCAAAGAAGGTCGCATATACGCCTCCAAAACAGCCTCATTACAATCAGGACAAGACATCCGAGTTCATCATCAAGCTTCTCCAATTCCTCGTCCCGCTTGCAATTTTGGGATTGGCAGTCGCCATACGCTTCTACACCAAACAAGCTTGA 405 46.17 MGSGEKVFTLKEVAEHSNQKDCWLIISGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDVGHSDNAREMMDQYYVGEIDASTIPKKVAYTPPKQPHYNQDKTSEFIIKLLQFLVPLAILGLAVAIRFYTKQA 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25617233 25621198 - Lsi05G018330.1 Lsi05g01833 664325

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01833 134 SMART Cyt_b5_2 8 81 IPR001199 -
Lsi05g01833 134 PANTHER CYTOCHROME B5 1 132 - -
Lsi05g01833 134 Gene3D - 2 86 IPR036400 -
Lsi05g01833 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Lsi05g01833 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Lsi05g01833 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Lsi05g01833 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Lsi05g01833 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 80 IPR001199 -
Lsi05g01833 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 6 90 IPR036400 -
Lsi05g01833 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Lsi05g01833 134 PANTHER CYTOCHROME B5 1 132 - -
Lsi05g01833 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01833 K23490 CYB5; cytochrome b5 - csv:101214209 270.396
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01833 Lsi-Chr5:25617233 Lsi09g00003 Lsi-Chr9:27466 3.17E-68 dispersed
Lsi09g01601 Lsi-Chr9:24153292 Lsi05g01833 Lsi-Chr5:25617233 4.40E-10 dispersed
Lsi05g01118 Lsi-Chr5:18960560 Lsi05g01833 Lsi-Chr5:25617233 8.92E-68 wgd
Lsi05g01833 Lsi-Chr5:25617233 Lsi09g01152 Lsi-Chr9:18461940 3.59E-63 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi09g00003 . 1 134 NADPH P450 reductases AT5G53560 78.4 7.0e-59 223.4
Lsi05g01833 . 1 133 NADPH P450 reductases AT5G53560 67.7 4.1e-51 197.6
Lsi05g01118 . 4 131 NADPH P450 reductases AT5G53560 63.3 4.4e-45 177.6
Lsi09g01152 . 36 139 NADPH P450 reductases AT5G53560 70.2 4.7e-39 157.5
Lsi05g01833 . 1 132 NADPH P450 reductases AT5G48810 65.7 2.6e-48 188.3
Lsi05g01118 . 2 132 NADPH P450 reductases AT5G48810 61.7 4.6e-45 177.6
Lsi09g00003 . 1 134 NADPH P450 reductases AT5G48810 59.6 7.9e-45 176.8
Lsi05g01833 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.0e-51 196.8
Lsi09g01152 . 31 139 NADPH P450 reductases AT2G32720 83.5 1.2e-47 186.0
Lsi05g01118 . 21 132 NADPH P450 reductases AT2G32720 72.3 2.7e-42 168.3
Lsi09g00003 . 22 133 NADPH P450 reductases AT2G32720 66.1 4.3e-40 161.0
Lsi01g01736 CCT 3 257 NADPH P450 reductases AT5G17770 79.6 1.2e-116 416.4
Lsi10g00932 . 10 282 NADPH P450 reductases AT5G17770 71.8 4.5e-116 414.5
Lsi03g01657 CCT 2 110 NADPH P450 reductases AT5G17770 81.7 1.8e-48 189.9
Lsi09g00003 . 1 134 NADPH P450 reductases AT5G53560 78.4 7.0e-59 223.4
Lsi05g01833 . 1 133 NADPH P450 reductases AT5G53560 67.7 4.1e-51 197.6
Lsi05g01118 . 4 131 NADPH P450 reductases AT5G53560 63.3 4.4e-45 177.6
Lsi09g01152 . 36 139 NADPH P450 reductases AT5G53560 70.2 4.7e-39 157.5
Lsi05g01833 . 1 132 NADPH P450 reductases AT5G48810 65.7 2.6e-48 188.3
Lsi05g01118 . 2 132 NADPH P450 reductases AT5G48810 61.7 4.6e-45 177.6
Lsi09g00003 . 1 134 NADPH P450 reductases AT5G48810 59.6 7.9e-45 176.8
Lsi05g01833 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.0e-51 196.8
Lsi09g01152 . 31 139 NADPH P450 reductases AT2G32720 83.5 1.2e-47 186.0
Lsi05g01118 . 21 132 NADPH P450 reductases AT2G32720 72.3 2.7e-42 168.3
Lsi09g00003 . 22 133 NADPH P450 reductases AT2G32720 66.1 4.3e-40 161.0
Lsi01g01736 CCT 3 257 NADPH P450 reductases AT5G17770 79.6 1.2e-116 416.4
Lsi10g00932 . 10 282 NADPH P450 reductases AT5G17770 71.8 4.5e-116 414.5
Lsi03g01657 CCT 2 110 NADPH P450 reductases AT5G17770 81.7 1.8e-48 189.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156