Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi05g01833 | ATGGGTAGCGGAGAAAAGGTATTCACCTTGAAGGAAGTCGCTGAGCACAGCAATCAAAAGGACTGTTGGCTCATCATCAGTGGCAAGGTATATGATGTGACCAAGTTCTTAGAAGACCATCCTGGTGGTGACGATGTTTTGTTGTCGGCTACAGGAAAAGACGCAACCGACGACTTTGAAGACGTTGGGCACAGTGACAACGCAAGAGAAATGATGGATCAATACTATGTTGGGGAGATTGATGCTTCAACAATTCCAAAGAAGGTCGCATATACGCCTCCAAAACAGCCTCATTACAATCAGGACAAGACATCCGAGTTCATCATCAAGCTTCTCCAATTCCTCGTCCCGCTTGCAATTTTGGGATTGGCAGTCGCCATACGCTTCTACACCAAACAAGCTTGA | 405 | 46.17 | MGSGEKVFTLKEVAEHSNQKDCWLIISGKVYDVTKFLEDHPGGDDVLLSATGKDATDDFEDVGHSDNAREMMDQYYVGEIDASTIPKKVAYTPPKQPHYNQDKTSEFIIKLLQFLVPLAILGLAVAIRFYTKQA | 134 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 25617233 | 25621198 | - | Lsi05G018330.1 | Lsi05g01833 | 664325 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi05g01833 | 134 | SMART | Cyt_b5_2 | 8 | 81 | IPR001199 | - | |
| Lsi05g01833 | 134 | PANTHER | CYTOCHROME B5 | 1 | 132 | - | - | |
| Lsi05g01833 | 134 | Gene3D | - | 2 | 86 | IPR036400 | - | |
| Lsi05g01833 | 134 | PRINTS | Cytochrome B5 signature | 68 | 80 | IPR001199 | - | |
| Lsi05g01833 | 134 | PRINTS | Cytochrome B5 signature | 40 | 54 | IPR001199 | - | |
| Lsi05g01833 | 134 | PRINTS | Cytochrome B5 signature | 30 | 40 | IPR001199 | - | |
| Lsi05g01833 | 134 | PRINTS | Cytochrome B5 signature | 55 | 62 | IPR001199 | - | |
| Lsi05g01833 | 134 | Pfam | Cytochrome b5-like Heme/Steroid binding domain | 9 | 80 | IPR001199 | - | |
| Lsi05g01833 | 134 | SUPERFAMILY | Cytochrome b5-like heme/steroid binding domain | 6 | 90 | IPR036400 | - | |
| Lsi05g01833 | 134 | ProSiteProfiles | Cytochrome b5 family, heme-binding domain profile. | 5 | 81 | IPR001199 | - | |
| Lsi05g01833 | 134 | PANTHER | CYTOCHROME B5 | 1 | 132 | - | - | |
| Lsi05g01833 | 134 | ProSitePatterns | Cytochrome b5 family, heme-binding domain signature. | 36 | 43 | IPR018506 | GO:0020037 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi05g01833 | Lsi-Chr5:25617233 | Lsi09g00003 | Lsi-Chr9:27466 | 3.17E-68 | dispersed | |
| Lsi09g01601 | Lsi-Chr9:24153292 | Lsi05g01833 | Lsi-Chr5:25617233 | 4.40E-10 | dispersed | |
| Lsi05g01118 | Lsi-Chr5:18960560 | Lsi05g01833 | Lsi-Chr5:25617233 | 8.92E-68 | wgd | |
| Lsi05g01833 | Lsi-Chr5:25617233 | Lsi09g01152 | Lsi-Chr9:18461940 | 3.59E-63 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi05g01833 | K23490 | - | csv:101214209 | 270.396 |