Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01835 ATGGAGAAAGACGATAACTACTCGAACGAAGCTGGTATGGCTCCAAGTTTCTCCAGCCACCAAGATCTTTACAATAACCAAGACCAATTCATGAGGTCTCGCCCCTTCGAAACCTCCGCCGACAACGCCACCGGAATCCTCACCTACTTTCCGGCCAACCCTCCGCCGCTGCAGCCAATAACCTCTCCGGACAAGCTCAGCTTTGCCGAGGTTATGCAGTTCGCCGACTTCGGTCCGAAGCTTAGTCTCAACCGGTTCGACGAGGATGATGAACCGCCTGGCATCGACCCGGTCTATTTCCTGAAGTTCCCGGTTTTGAATAACGAGAGGGTGGAGGAGGAGGCGGCGGCCGGAGAGGAGGAGGCTGCGGAAATGGAAGGGAGATTAATTGTTGGGGAATTAGAAGAGGAGGAGAATTTTAGGAATAATAATAATAGTATTATTAATAATAATAATAACAACAATAATAATAATAATGGAAATAAAAGGAAAAGAGGACGGTCGGTGAAGACAAGTGAAGAAGTGGAGAGCCAAAGGATGACACATATTGCGGTGGAGAGAAATCGAAGGAAGCAGATGAATGAGCATCTTCGAGTTTTGCGCTCTCTCATGCCTGGTTCTTACGTTCAAAGAGGAGATCAAGCTTCCATAATCGGCGGAGCAATCGAGTTTGTGAGAGAGCTAGAGCAACTCCTGCAGTGTCTAGAATCCCAAAAACGACGTCGTCTGTTAGGAGAACCACCACTAGTGCAGGCGGCCGACACACCGCCGTCGCAGCAACCACCATTTCTACAGGCAGGAGCAGGTAATTTCCCAGGTCATCAAAACGACGGGCAAATATTCGAAACGACAGCGGAGAGTAAATCATGTCTGGCTGACGTGGAAGTGAAGGTAGTAGGGTTTGACGCTATGATAAAAATTCTGTCGAGAAGACGACCGGGACAGCTCATCAAAGCCATCGCGGCTCTCGAAGATCTTCAACTAAATATTCTTCATACAAATATCACCACCATTGAACAGACTGTTCTTTATTCTTTCAACGTCAAGCAGATAGCAAGCGAGTCAAGATTCACAGCAGAAGATATAGCAAACTCAGTTCAGCAGATATTCAGTTTTATTCATGCAAATACCAGCATGTGA 1140 47.02 MEKDDNYSNEAGMAPSFSSHQDLYNNQDQFMRSRPFETSADNATGILTYFPANPPPLQPITSPDKLSFAEVMQFADFGPKLSLNRFDEDDEPPGIDPVYFLKFPVLNNERVEEEAAAGEEEAAEMEGRLIVGELEEEENFRNNNNSIINNNNNNNNNNNGNKRKRGRSVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEPPLVQAADTPPSQQPPFLQAGAGNFPGHQNDGQIFETTAESKSCLADVEVKVVGFDAMIKILSRRRPGQLIKAIAALEDLQLNILHTNITTIEQTVLYSFNVKQIASESRFTAEDIANSVQQIFSFIHANTSM 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25630566 25635763 + Lsi05G018350.1 Lsi05g01835 664327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01835 379 Gene3D - 168 243 IPR036638 GO:0046983
Lsi05g01835 379 Pfam Helix-loop-helix DNA-binding domain 178 229 IPR011598 GO:0046983
Lsi05g01835 379 SMART finulus 183 234 IPR011598 GO:0046983
Lsi05g01835 379 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 228 IPR011598 GO:0046983
Lsi05g01835 379 MobiDBLite consensus disorder prediction 1 28 - -
Lsi05g01835 379 PANTHER TRANSCRIPTION FACTOR FAMA 44 379 IPR044283 GO:0003700|GO:0010052
Lsi05g01835 379 MobiDBLite consensus disorder prediction 143 162 - -
Lsi05g01835 379 Coils Coil 108 128 - -
Lsi05g01835 379 MobiDBLite consensus disorder prediction 166 180 - -
Lsi05g01835 379 MobiDBLite consensus disorder prediction 143 180 - -
Lsi05g01835 379 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 177 249 IPR036638 GO:0046983
Lsi05g01835 379 MobiDBLite consensus disorder prediction 11 28 - -
Lsi05g01835 379 CDD bHLH_AtFAMA_like 180 248 - -
Lsi05g01835 379 PANTHER TRANSCRIPTION FACTOR FAMA 44 379 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01835 Lsi-Chr5:25630566 Lsi09g01653 Lsi-Chr9:24845081 2.63E-11 dispersed
Lsi05g00078 Lsi-Chr5:1507893 Lsi05g01835 Lsi-Chr5:25630566 7.24E-46 transposed
Lsi05g01454 Lsi-Chr5:22392843 Lsi05g01835 Lsi-Chr5:25630566 5.65E-46 transposed
Lsi05g02236 Lsi-Chr5:28977388 Lsi05g01835 Lsi-Chr5:25630566 2.80E-58 transposed
Lsi06g00151 Lsi-Chr6:1608957 Lsi05g01835 Lsi-Chr5:25630566 8.16E-49 transposed
Lsi07g01198 Lsi-Chr7:17487021 Lsi05g01835 Lsi-Chr5:25630566 9.13E-17 transposed
Lsi08g00990 Lsi-Chr8:18357345 Lsi05g01835 Lsi-Chr5:25630566 1.14E-54 transposed
Lsi11g00523 Lsi-Chr11:5508378 Lsi05g01835 Lsi-Chr5:25630566 8.60E-40 transposed
Lsi05g01835 Lsi-Chr5:25630566 Lsi09g01106 Lsi-Chr9:17688466 9.24E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25414 PF00010 HLH 7.80E-10 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01835 - - cpep:111790068 602.053