Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01838 ATGGCGGAACCGGCCGGAATGTACTCGGCCATTCCGGCGCTGCCGATGGACGGCGGTGGCGGTAAGTTTCAGGGTTCTTTAGATGGAACGAATCTTCCCGGCGACGCTTGTTTAGTTCTCACGTCGGATCCGAAGCCGCGCCTCCGCTGGACGGCGGAGCTCCATGAACGATTCGTTGATGCCGTCACTCAGCTCGGCGGCCCCGACAAGGCAACCCCAAAAACAATTATGAGAACAATGGGAGTAAAAGGTCTCACCCTTTATCACTTAAAGTCACACCTCCAGGTTTGTTCATATCACCATTGTACTGATCGAACCCGACACTCAGCTTGTTTTGTTCATTTGCTTTCAGCTTCTTGCATTGCAGAAAGTCAAGAAACAAGTTCGTCTTCGTCGCCATCGTCAAGAATAATGACACAGGATCTGAATGACGGTTTCCAAGTCACGGAGGCTTTACGAGTGCAAATGGAGGTTCAAAGAAGGCTGCACGAGCAGCTGGAGGTGCAGCGTCATCTTCAACTTCGCATTGAAGCACAAGGCAAATACTTGCAGTCAATACTCGAGCGGGCTTGTCAAGCATTGAGTGATCAGGCTGCAGCGTCTGCTGGACTCGAAGCTGCCAGAGAAGAGCTCTCTGAACTTGCAATCAAAGTTTCCAATGATTCTAAAGAGATGGCACCATTGGAGACTCGAAAAGTGCTTCCCTTTTCAGAACTTGCTGCTGCTCTAGAAAATCGAAAGGCTCCTACCGTTATGCCTCGAATAGGCGATTGTTCAATGGATAGCTGCCTGACATCAGCTGGTAGCCCGGTTTCCCCGATCGGAGTAGGATCAACTGCCACCGCAATGAAGAGACCGAGACCCATTTTTAGTCATGGAGATTCAATGGTTCTCGAGGGCAATGCCCGACACGATGTCGAATGGATGATGAGTAATATTGGATGA 945 50.16 MAEPAGMYSAIPALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQVCSYHHCTDRTRHSACFVHLLSASCIAESQETSSSSSPSSRIMTQDLNDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILERACQALSDQAAASAGLEAAREELSELAIKVSNDSKEMAPLETRKVLPFSELAAALENRKAPTVMPRIGDCSMDSCLTSAGSPVSPIGVGSTATAMKRPRPIFSHGDSMVLEGNARHDVEWMMSNIG 314
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 25663614 25670407 + Lsi05G018380.1 Lsi05g01838 664330
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01838 314 SUPERFAMILY Homeodomain-like 45 97 IPR009057 -
Lsi05g01838 314 PANTHER PROTEIN PHR1-LIKE 2 7 311 - -
Lsi05g01838 314 Coils Coil 204 224 - -
Lsi05g01838 314 Pfam Myb-like DNA-binding domain 48 95 IPR001005 -
Lsi05g01838 314 Gene3D - 44 101 - -
Lsi05g01838 314 Pfam MYB-CC type transfactor, LHEQLE motif 147 192 IPR025756 -
Lsi05g01838 314 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 45 96 IPR006447 GO:0003677
Lsi05g01838 314 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 7 311 IPR044848 GO:0003700
Lsi05g01838 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 102 IPR017930 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00519 Lsi-Chr1:4238229 Lsi05g01838 Lsi-Chr5:25663614 1.76E-53 dispersed
Lsi03g01290 Lsi-Chr3:23709912 Lsi05g01838 Lsi-Chr5:25663614 1.37E-47 dispersed
Lsi05g01046 Lsi-Chr5:17974512 Lsi05g01838 Lsi-Chr5:25663614 1.59E-35 dispersed
Lsi05g01838 Lsi-Chr5:25663614 Lsi10g01509 Lsi-Chr10:19348345 7.20E-46 dispersed
Lsi05g01838 Lsi-Chr5:25663614 Lsi11g01586 Lsi-Chr11:24259033 1.74E-64 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25415 PF00249 Myb_DNA-binding 5.90E-06 CL0123 Lsi TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01838 - - cmax:111473855 503.056