Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi05g01838 | ATGGCGGAACCGGCCGGAATGTACTCGGCCATTCCGGCGCTGCCGATGGACGGCGGTGGCGGTAAGTTTCAGGGTTCTTTAGATGGAACGAATCTTCCCGGCGACGCTTGTTTAGTTCTCACGTCGGATCCGAAGCCGCGCCTCCGCTGGACGGCGGAGCTCCATGAACGATTCGTTGATGCCGTCACTCAGCTCGGCGGCCCCGACAAGGCAACCCCAAAAACAATTATGAGAACAATGGGAGTAAAAGGTCTCACCCTTTATCACTTAAAGTCACACCTCCAGGTTTGTTCATATCACCATTGTACTGATCGAACCCGACACTCAGCTTGTTTTGTTCATTTGCTTTCAGCTTCTTGCATTGCAGAAAGTCAAGAAACAAGTTCGTCTTCGTCGCCATCGTCAAGAATAATGACACAGGATCTGAATGACGGTTTCCAAGTCACGGAGGCTTTACGAGTGCAAATGGAGGTTCAAAGAAGGCTGCACGAGCAGCTGGAGGTGCAGCGTCATCTTCAACTTCGCATTGAAGCACAAGGCAAATACTTGCAGTCAATACTCGAGCGGGCTTGTCAAGCATTGAGTGATCAGGCTGCAGCGTCTGCTGGACTCGAAGCTGCCAGAGAAGAGCTCTCTGAACTTGCAATCAAAGTTTCCAATGATTCTAAAGAGATGGCACCATTGGAGACTCGAAAAGTGCTTCCCTTTTCAGAACTTGCTGCTGCTCTAGAAAATCGAAAGGCTCCTACCGTTATGCCTCGAATAGGCGATTGTTCAATGGATAGCTGCCTGACATCAGCTGGTAGCCCGGTTTCCCCGATCGGAGTAGGATCAACTGCCACCGCAATGAAGAGACCGAGACCCATTTTTAGTCATGGAGATTCAATGGTTCTCGAGGGCAATGCCCGACACGATGTCGAATGGATGATGAGTAATATTGGATGA | 945 | 50.16 | MAEPAGMYSAIPALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQVCSYHHCTDRTRHSACFVHLLSASCIAESQETSSSSSPSSRIMTQDLNDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILERACQALSDQAAASAGLEAAREELSELAIKVSNDSKEMAPLETRKVLPFSELAAALENRKAPTVMPRIGDCSMDSCLTSAGSPVSPIGVGSTATAMKRPRPIFSHGDSMVLEGNARHDVEWMMSNIG | 314 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 25663614 | 25670407 | + | Lsi05G018380.1 | Lsi05g01838 | 664330 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi05g01838 | 314 | SUPERFAMILY | Homeodomain-like | 45 | 97 | IPR009057 | - | |
Lsi05g01838 | 314 | PANTHER | PROTEIN PHR1-LIKE 2 | 7 | 311 | - | - | |
Lsi05g01838 | 314 | Coils | Coil | 204 | 224 | - | - | |
Lsi05g01838 | 314 | Pfam | Myb-like DNA-binding domain | 48 | 95 | IPR001005 | - | |
Lsi05g01838 | 314 | Gene3D | - | 44 | 101 | - | - | |
Lsi05g01838 | 314 | Pfam | MYB-CC type transfactor, LHEQLE motif | 147 | 192 | IPR025756 | - | |
Lsi05g01838 | 314 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 45 | 96 | IPR006447 | GO:0003677 | |
Lsi05g01838 | 314 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 7 | 311 | IPR044848 | GO:0003700 | |
Lsi05g01838 | 314 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 42 | 102 | IPR017930 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00519 | Lsi-Chr1:4238229 | Lsi05g01838 | Lsi-Chr5:25663614 | 1.76E-53 | dispersed | |
Lsi03g01290 | Lsi-Chr3:23709912 | Lsi05g01838 | Lsi-Chr5:25663614 | 1.37E-47 | dispersed | |
Lsi05g01046 | Lsi-Chr5:17974512 | Lsi05g01838 | Lsi-Chr5:25663614 | 1.59E-35 | dispersed | |
Lsi05g01838 | Lsi-Chr5:25663614 | Lsi10g01509 | Lsi-Chr10:19348345 | 7.20E-46 | dispersed | |
Lsi05g01838 | Lsi-Chr5:25663614 | Lsi11g01586 | Lsi-Chr11:24259033 | 1.74E-64 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25415 | PF00249 | Myb_DNA-binding | 5.90E-06 | CL0123 | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi05g01838 | - | - | cmax:111473855 | 503.056 |