Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01838 ATGGCGGAACCGGCCGGAATGTACTCGGCCATTCCGGCGCTGCCGATGGACGGCGGTGGCGGTAAGTTTCAGGGTTCTTTAGATGGAACGAATCTTCCCGGCGACGCTTGTTTAGTTCTCACGTCGGATCCGAAGCCGCGCCTCCGCTGGACGGCGGAGCTCCATGAACGATTCGTTGATGCCGTCACTCAGCTCGGCGGCCCCGACAAGGCAACCCCAAAAACAATTATGAGAACAATGGGAGTAAAAGGTCTCACCCTTTATCACTTAAAGTCACACCTCCAGGTTTGTTCATATCACCATTGTACTGATCGAACCCGACACTCAGCTTGTTTTGTTCATTTGCTTTCAGCTTCTTGCATTGCAGAAAGTCAAGAAACAAGTTCGTCTTCGTCGCCATCGTCAAGAATAATGACACAGGATCTGAATGACGGTTTCCAAGTCACGGAGGCTTTACGAGTGCAAATGGAGGTTCAAAGAAGGCTGCACGAGCAGCTGGAGGTGCAGCGTCATCTTCAACTTCGCATTGAAGCACAAGGCAAATACTTGCAGTCAATACTCGAGCGGGCTTGTCAAGCATTGAGTGATCAGGCTGCAGCGTCTGCTGGACTCGAAGCTGCCAGAGAAGAGCTCTCTGAACTTGCAATCAAAGTTTCCAATGATTCTAAAGAGATGGCACCATTGGAGACTCGAAAAGTGCTTCCCTTTTCAGAACTTGCTGCTGCTCTAGAAAATCGAAAGGCTCCTACCGTTATGCCTCGAATAGGCGATTGTTCAATGGATAGCTGCCTGACATCAGCTGGTAGCCCGGTTTCCCCGATCGGAGTAGGATCAACTGCCACCGCAATGAAGAGACCGAGACCCATTTTTAGTCATGGAGATTCAATGGTTCTCGAGGGCAATGCCCGACACGATGTCGAATGGATGATGAGTAATATTGGATGA 945 50.16 MAEPAGMYSAIPALPMDGGGGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQVCSYHHCTDRTRHSACFVHLLSASCIAESQETSSSSSPSSRIMTQDLNDGFQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILERACQALSDQAAASAGLEAAREELSELAIKVSNDSKEMAPLETRKVLPFSELAAALENRKAPTVMPRIGDCSMDSCLTSAGSPVSPIGVGSTATAMKRPRPIFSHGDSMVLEGNARHDVEWMMSNIG 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25663614 25670407 + Lsi05G018380.1 Lsi05g01838 664330

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01838 314 SUPERFAMILY Homeodomain-like 45 97 IPR009057 -
Lsi05g01838 314 PANTHER PROTEIN PHR1-LIKE 2 7 311 - -
Lsi05g01838 314 Coils Coil 204 224 - -
Lsi05g01838 314 Pfam Myb-like DNA-binding domain 48 95 IPR001005 -
Lsi05g01838 314 Gene3D - 44 101 - -
Lsi05g01838 314 Pfam MYB-CC type transfactor, LHEQLE motif 147 192 IPR025756 -
Lsi05g01838 314 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 45 96 IPR006447 GO:0003677
Lsi05g01838 314 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 7 311 IPR044848 GO:0003700
Lsi05g01838 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 102 IPR017930 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01838 - - - cmax:111473855 503.056
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00519 Lsi-Chr1:4238229 Lsi05g01838 Lsi-Chr5:25663614 1.76E-53 dispersed
Lsi03g01290 Lsi-Chr3:23709912 Lsi05g01838 Lsi-Chr5:25663614 1.37E-47 dispersed
Lsi05g01046 Lsi-Chr5:17974512 Lsi05g01838 Lsi-Chr5:25663614 1.59E-35 dispersed
Lsi05g01838 Lsi-Chr5:25663614 Lsi10g01509 Lsi-Chr10:19348345 7.20E-46 dispersed
Lsi05g01838 Lsi-Chr5:25663614 Lsi11g01586 Lsi-Chr11:24259033 1.74E-64 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g894 . . . . . Bpe14g00844 . . . . . Cma14g01894 Car06g01068 Car14g01696 . Cpe08g00397 Cpe03g01593 Bhi01g00235 . . . . . . . . . . . . . . . Cone7ag0390 . Lsi05g01838 . . Cme06g00381 . . . Bda13g00487 . . Bma02g01204 Bma06g01283 . Cmo06g01253 Cmo14g01946 . . . . . . . . . . . . . Cla05g00348 Cam05g0378 Cec05g0383 Cco05g0383 Clacu05g0372 Cmu05g0357 Cre05g0421 . Csa03g01095 Chy06g00365 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi05g01838 . 7 266 G2-like Transcription Factor Family AT3G24120 58.1 8.2e-68 254.2
Lsi11g01586 . 16 173 G2-like Transcription Factor Family AT3G24120 63.0 4.1e-43 172.2
Lsi10g01509 . 22 167 G2-like Transcription Factor Family AT3G24120 56.6 3.4e-37 152.5
Lsi01g00519 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Lsi04g00286 . 19 257 G2-like Transcription Factor Family AT1G25550 54.9 6.3e-54 208.0
Lsi08g00393 . 20 258 G2-like Transcription Factor Family AT1G25550 54.1 3.8e-51 198.7
Lsi02g01341 . 1 269 G2-like Transcription Factor Family AT3G46640 52.2 1.5e-62 236.9
Lsi03g01637 . 1 286 G2-like Transcription Factor Family AT5G05090 55.6 7.9e-70 260.8
Lsi05g01838 . 7 314 G2-like Transcription Factor Family AT4G13640 53.6 6.1e-55 211.5
Lsi05g01838 . 7 266 G2-like Transcription Factor Family AT3G24120 58.1 8.2e-68 254.2
Lsi11g01586 . 16 173 G2-like Transcription Factor Family AT3G24120 63.0 4.1e-43 172.2
Lsi10g01509 . 22 167 G2-like Transcription Factor Family AT3G24120 56.6 3.4e-37 152.5
Lsi01g00519 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 3.4e-37 152.5
Lsi11g01586 . 1 387 G2-like Transcription Factor Family AT1G79430 52.6 2.1e-81 299.7
Lsi10g01509 . 1 166 G2-like Transcription Factor Family AT1G79430 71.0 3.1e-61 232.6
Lsi03g01290 . 70 292 G2-like Transcription Factor Family AT5G18240 53.3 6.4e-50 194.9
Lsi01g00520 . 84 343 G2-like Transcription Factor Family AT2G01060 56.8 2.5e-51 199.1
Lsi03g01637 . 1 286 G2-like Transcription Factor Family AT3G10760 56.9 5.6e-81 298.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003817 2 2 2 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25415 PF00249 Myb_DNA-binding 5.90E-06 CL0123 Lsi TF