Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01843 ATGTCCAAAGTTGGAAGCATATTTTTCTGCTGCAGTTCATCAAATAAATATAACAGATTGGATGCAAAGCTTGGAAGAAAAATGGTTGAAGTCAAAAGAAATTTAGCTGGACATGACAATTTCAAGTCATTAAATGGCATAATTTTGAGATTTCCTCAATTCAAGGAGGTATTACAAAACATCAGGGGTGTATTTGAACAGTATGGTGAGCTTTATTTCAGCTGTATCACTCTTTCTGAGATTCTCTTGCTCAATATTTTCTCACATTCTCTCACTATCTCTCACACAGATGAAGATTCGAATGGAAGCATCGATCACGAAGAACTCAAGAAATGCTTACAACAGCTACAAATGCATATGACCGAGGACGAAGTCGAGGATCTTTTCCACTCTTGTGACATTGATGGAAGTGCCGGAATACAATTCAACGAGTTTATCGTTCTCTTATGTCTCATTTATCTTCTCAAAGACGAACATTCACCCACTAAATCAAAGCTGGGTTCACCTCAACTTGAAGCAACTTTTGACACAATCATCCAAGCTTTCATATTTCTAGATAAAAATGGCGATGGCAAGCTTAACAGGAAAGAAATGGTCAAGGCTCTGAATGAGGCTTCTCCATCCGAGAGATCCCCTGCACGCATTACAAAGACTAGATTCAGTATTTCTCCCTTCATTAAAGATATTCCATATTCGTTTTTTTGTTTTTACAAACCGTTCTTGAAAGTTAAAACTTCTGGTCAAACAATGTGTCGAATACATTACTGA 768 37.11 MSKVGSIFFCCSSSNKYNRLDAKLGRKMVEVKRNLAGHDNFKSLNGIILRFPQFKEVLQNIRGVFEQYGELYFSCITLSEILLLNIFSHSLTISHTDEDSNGSIDHEELKKCLQQLQMHMTEDEVEDLFHSCDIDGSAGIQFNEFIVLLCLIYLLKDEHSPTKSKLGSPQLEATFDTIIQAFIFLDKNGDGKLNRKEMVKALNEASPSERSPARITKTRFSISPFIKDIPYSFFCFYKPFLKVKTSGQTMCRIHY 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25689556 25691733 + Lsi05G018430.1 Lsi05g01843 664335

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01843 255 ProSiteProfiles EF-hand calcium-binding domain profile. 120 155 IPR002048 GO:0005509
Lsi05g01843 255 Pfam EF-hand domain pair 97 147 IPR002048 GO:0005509
Lsi05g01843 255 SUPERFAMILY EF-hand 95 205 IPR011992 -
Lsi05g01843 255 ProSitePatterns EF-hand calcium-binding domain. 97 109 IPR018247 -
Lsi05g01843 255 PANTHER CALCIUM-BINDING PROTEIN CML22-RELATED 95 221 - -
Lsi05g01843 255 PANTHER CALCIUM-BINDING PROTEIN CML22-RELATED 2 70 - -
Lsi05g01843 255 PANTHER TROPONIN 95 221 - -
Lsi05g01843 255 PANTHER TROPONIN 2 70 - -
Lsi05g01843 255 ProSiteProfiles EF-hand calcium-binding domain profile. 173 208 IPR002048 GO:0005509
Lsi05g01843 255 SMART efh_1 177 205 IPR002048 GO:0005509
Lsi05g01843 255 SMART efh_1 124 152 IPR002048 GO:0005509
Lsi05g01843 255 SMART efh_1 88 116 IPR002048 GO:0005509
Lsi05g01843 255 ProSiteProfiles EF-hand calcium-binding domain profile. 97 119 IPR002048 GO:0005509
Lsi05g01843 255 Pfam EF hand 180 198 IPR002048 GO:0005509
Lsi05g01843 255 ProSitePatterns EF-hand calcium-binding domain. 186 198 IPR018247 -
Lsi05g01843 255 CDD EFh 97 149 IPR002048 GO:0005509
Lsi05g01843 255 Gene3D - 77 227 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01843 K13448 CML; calcium-binding protein CML - csv:101213966 356.681
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00517 Lsi-Chr5:6473851 Lsi05g01843 Lsi-Chr5:25689556 9.88E-45 dispersed
Lsi05g01843 Lsi-Chr5:25689556 Lsi01g00424 Lsi-Chr1:3596667 9.62E-09 dispersed
Lsi05g01843 Lsi-Chr5:25689556 Lsi05g00594 Lsi-Chr5:7378496 1.07E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g895 . . . . . . . . . . . Cma14g01895 Car06g01066 Car14g01697 Sed12g0379 Cpe08g00398 Cpe03g01594 Bhi01g00233 Tan10g0519 Cmetu06g0638 . . . . . . . . . . . . . Cone7ag0391 . Lsi05g01843 . . Cme06g00380 . . . . . . . . . Cmo06g01252 Cmo14g01947 . . . . . . . . . . . . . Cla05g00347 Cam05g0377 Cec05g0382 Cco05g0382 Clacu05g0371 Cmu05g0356 Cre05g0420 . Csa03g01094 Chy06g00363 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002695 1 8 1 3 1 0 3 0 1 1 0 0 3 2 2 3 0 4 3 0 2 2 2 2 2 1 1 3 4 2 57