Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01844 ATGGCTTGTGAAGCTATACAACTGTGGACATTTAATGGATTAGTGGCTGCATTTCTTGATCTTGGTATAGCTTTCTTATTATTATGTGCATCAAGTCTTGTTTTCTTTACATCCAAATTTCTTGCACTGTTTGGATTATGTCTACCTTGCCCTTGTGATGGGCTATTTGGGAACCTTAGTAGTGATCACTGCTTCCAAAAGTTACTTGTGGATCGTTCGTCCAAAAAAATATCTTCAGTCTTACATTCGACTATAAAAAAGTTCCCATTAAATTCCGTGTGGGATGAGCCAAAATGTTGTTTTAAGTCAATGTTGGTGCACGAGAGGAATGTCAAAGAGGAACATGTTGAATTGGAAGGTGAAACATCAGGTAGTTCCTCTTTTAAAACTAGATCACAACAGGGTATGATTTATGGAGACTTTCCCAGTGTCTACGAATTGCATTGTGGAGGTGGTGGGGATTTCCGGAAGGTCATATCAGCGTCTCCGAACGACATTTCACAGTTGGATGTGGAACTGGAAGACCTTTCTCATTCTCCTTCAAGCTTCAGTGGATTTGGGGATAACAATACTGAGGACGGCTTCTTTTCTGTTGATTCTGGAGATGAAAGGGAGGCTTCATCAGAAAACAGTGATCGATATAAAGTATTTCCCGATCTTGAACTGGATGATTCTTATGATAAGAAACTATGCGTGGAGATGTATGAAGCATCTGTTGAAGAGGCTGGGAATAGCTGCAGAAGGGAGTCATGTGTGGATGGTAATGAGAGTGATACAATCAAACTATTGGAACAAGCACTTGAAGAAGAGCAGACGGCTCGCGCTACCCTGTACATGGAGCTCGAGAAAGAGAGAAATGCTGCTGCCACTGCTGCTGATGAGGCCATGGCTATGATATTACGTCTTCAGGAGGAGAAGGCATCGATAGAAATGGATGCTAGGCAATACCAGAGGATGATAGAGGAGAAGACTGCTTATGATGCGGAGGAAATGAGTATTCTTAAAGAAATTCTAGTGAGAAGAGAGCGGGAAATGCATTTCTTAGAGAAGGAAGTTGAAGCTTTTCGAAAAAGTTTCTTTGACGATGATGGAGTGGGTGTTGATATGCTTGACTCGGAATTTACACCTGCAAGGACCCCTTCTTTTCCTTATCCAACTGAAGATCCATCGCATATGCTTCAATGCATTAATAGATCCACTAGAGACGAGCAAGATTCCAATTACAAAATACATTCTTTGCAATATGAGATACCATCAGTGGAGTCACGAAACTTAACTTTTGAGTTTGGGGAAGAGTCGCCATTTATTCAAGCGGATGAAATTGCTGATGCTGCAAAAGCTAGGGGCATGTTGTTGCACCAAGTTACTGATAACTTCAAGGGCAGTGAAGAGATTGAGCATGAGTTACAAGGAAAGGGCATGGTAGAAGATGAGAATTTATGCGTTGTACCAGGAGACATAAATAAACTGGATCCATATCTCCAAAGCAATGAGTCAAATGGTATACTTAAGGTTGAGAAATGCATGGAATTAATTGCAGATGAACAAGGAAAAGTCGACGAAGTTTCGTATGACGAATCGGTATTGGCTAAAACAATTCTTCCTTGTCTTGAGTACAATTTGGAAAAGAATGGTGACCATCAAGAGATGCGGACAAAAGATCTTGACTCTGTGAACGCTACAGATCCCCATCCTCATGATATTCATGTCGTTGAAGATGAAGCTAGAATTTCAAATGAAGCAATTGCTAATGCAAGTGAAGAACCATTGGTTAATGGTACCTCGAGTATTCCGGTTAAATGTGACAGTCCATCCTTCAACTTGCTGCAGAGTGAACTTGAAATCATGAGAACTAGCTCAGATGCCACTGGAAGATTTCCACCAATGGCTCGTTCTCAAAGCAATTCCTTGCGTTCTGAATTGCGTAGAAATTCGATGTCTGCTGTCGATTATGAAAGGTCAAAAATTGGCAATGAAGTTGAGTGGCTCAAAGGAAGGCTAAAAATTGTTCAAGAGGGAAGAGAAAAACTCAAGGTCTCTGTGGAGCACAAAGAGAAGAACGATCAGTTTCAACTTTTAGAAAACATAACAAATCACCTTCGCGAGATCCGCCAACTGACGGATCCTGAAAAGACAGTTCTGCAGGCTCCATTGCCTCCATCCTCAACGGATGTGTTGAAGAAACGTTGCTGGCGAAGCTCATCCTTGAGCGTTCACAGAAGCAGCTAG 2229 41.54 MACEAIQLWTFNGLVAAFLDLGIAFLLLCASSLVFFTSKFLALFGLCLPCPCDGLFGNLSSDHCFQKLLVDRSSKKISSVLHSTIKKFPLNSVWDEPKCCFKSMLVHERNVKEEHVELEGETSGSSSFKTRSQQGMIYGDFPSVYELHCGGGGDFRKVISASPNDISQLDVELEDLSHSPSSFSGFGDNNTEDGFFSVDSGDEREASSENSDRYKVFPDLELDDSYDKKLCVEMYEASVEEAGNSCRRESCVDGNESDTIKLLEQALEEEQTARATLYMELEKERNAAATAADEAMAMILRLQEEKASIEMDARQYQRMIEEKTAYDAEEMSILKEILVRREREMHFLEKEVEAFRKSFFDDDGVGVDMLDSEFTPARTPSFPYPTEDPSHMLQCINRSTRDEQDSNYKIHSLQYEIPSVESRNLTFEFGEESPFIQADEIADAAKARGMLLHQVTDNFKGSEEIEHELQGKGMVEDENLCVVPGDINKLDPYLQSNESNGILKVEKCMELIADEQGKVDEVSYDESVLAKTILPCLEYNLEKNGDHQEMRTKDLDSVNATDPHPHDIHVVEDEARISNEAIANASEEPLVNGTSSIPVKCDSPSFNLLQSELEIMRTSSDATGRFPPMARSQSNSLRSELRRNSMSAVDYERSKIGNEVEWLKGRLKIVQEGREKLKVSVEHKEKNDQFQLLENITNHLREIRQLTDPEKTVLQAPLPPSSTDVLKKRCWRSSSLSVHRSS 742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25693622 25697562 + Lsi05G018440.1 Lsi05g01844 664336

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01844 742 MobiDBLite consensus disorder prediction 625 641 - -
Lsi05g01844 742 Coils Coil 260 280 - -
Lsi05g01844 742 Coils Coil 292 319 - -
Lsi05g01844 742 ProSiteProfiles GTD-binding domain profile. 258 356 IPR007656 -
Lsi05g01844 742 PANTHER BNAANNG28530D PROTEIN 3 728 - -
Lsi05g01844 742 Coils Coil 338 358 - -
Lsi05g01844 742 MobiDBLite consensus disorder prediction 621 641 - -
Lsi05g01844 742 PANTHER BNAANNG28530D PROTEIN 3 728 - -
Lsi05g01844 742 Pfam Zein-binding 263 352 IPR007656 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01844 - - - csv:101204513 1099.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02086 Lsi-Chr2:27051283 Lsi05g01844 Lsi-Chr5:25693622 2.41E-21 dispersed
Lsi05g01844 Lsi-Chr5:25693622 Lsi09g00670 Lsi-Chr9:7556365 2.66E-18 dispersed
Lsi05g01844 Lsi-Chr5:25693622 Lsi11g00421 Lsi-Chr11:4458178 7.73E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g900 . . . . . . . . . . . Cma14g01896 . Car14g01698 Sed02g1501 Cpe08g00399 Cpe03g01595 Bhi01g00229 Tan10g0517 Cmetu06g0717 . Hepe05g1763 . Lcy11g1777 . . . . . . . . . . . Lsi05g01844 . . Cme06g00379 . . . . . . . Bma06g01282 . Cmo06g01251 Cmo14g01948 . . . . . . . . . . . . . . . . . . . . . Csa03g01093 Chy06g00362 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006891 1 2 1 1 1 1 0 1 1 1 1 1 2 0 1 2 1 1 2 1 1 1 1 1 1 1 0 8 1 0 37