Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01845 ATGGGGAAGAAAGTTAAGAAGAAGACCAACCGAGCTCCTCCAAAAGAGAAGCGGGTATCTTCAAGTTCACCGAGGAAGGTGCCCCAGCGAAGCAGCACAACGGTGGAGACTGCTGATGAGGAGGTTTCAGTTGTGAAGGAGAAAAGCCAATGCCGGCATCTTGATAAATGCTTTAATTTAAATGAGTTATCATCTAAACTTGGGTCCTCCGAACCTATTAGCTGCGAAGATTGTCAAGAAAGTTCAGCTGATAGACGGGGGAGTAGGGGGAAGGCTAGACATGGGAAGAAAAAAGGGGGAACTTCTGTGGATGTAAAAACTGATGCCAAAGCAATTTGGATTTGTTTGCAGTGTGGACATTATGCCTGTGGGGGTATTGGACTTCCTACAAACTCTCAGAGTCATGCTGTTCGGCACGTCAGGCAAACTCGTCACCCTGTGGTGATTCAGTTTGAAAACCCGCAGCTTCGATGGTGTTTCTCTTGCAATACATTACTTCCAGTAGAGAAAACTGAAGAGAATGGTGAACAAAAGGATGGCTTGTCTAATGTGGTGAAATTAATTAGGGACCGCTCAATGGAATCCTCATCTGTGGATGTTAAGAACACATGGCACGCAAGTAGTGAAGTTACAACTGTAACTAAATCAGAAAGTTCAGTATTAAGTGATTTGGACCGAAGAAATCATTATGTTGTAAAAGGATTGATTAATCTCGGTAACACTTGTTTTTTCAATTCAATCCTTCAAAATCTCTTGGTCATTGATATGTTGAGAGATCATTTCGTGAAATTGGAAGAATGTGTTGGACCCTTAACTATAGCTTTGAAGAAGATCTTTATAGAAGCAAGAACGGAAACCAGAATGAAAGGTTCAATAAATCCGAGATCAGTTTTTGGCTGCATCTCTTCCAAAGCCCCTCAGTTCAAAGGATATGAACAACATGACAGTCATGAATTGCTCCGTGTCCTACTTGATGCATTGTCTTCTGAAGAGCTGACTTCGAGGAAGATGACGAATTCTAAGGAAGAGAGAAATCCCACTCCTACTTTTGTTGATGAGATGTTTGGGGGGCAAATATCTAGTGCCGTATGTTGCAAAGAATGTGGCCATACGTCGACAGTTTATGAGCCATTTCTAGATCTTTCTCTTCCCGTTCCAATGAAGAAACCTCTGGCCAAAAAGGTCCAACCAGCCTCTCGGGCAAAGAAGACAAAAGTGCCACCCAAGAGAAATGGGAAGACGATTCCTAAAAATGACAAGGGTTCAGATGTACTACCAGTTCAAATTGCCTCAGTTCCATCATCTAGTAAGGAGTCTTCCTTTCCATCAGAGGCCAGCGCCAGTAGCACAACTACCATCATGGAGAAGACTTTAACTTCTCAGAATGTCTCAGCTGTTAAAGAGTCCGAAAAAGAAGTTTTGATTGAGAATGGAGGAGAATGTGCTTCAGATAATTTGACGTGGATGGATTTCCTTGAACCAGAACTAAATGCCGAAAATTGTGATATTCCCACTACTCAGGATTCTGAAAATAATGTTGAAGTATTTAATAGTGATGACTCACAACAAAGCGTCTCTGGGTTGAGTATGCAGGTTTCATCCCTTCACAATGAGCCCAATCAACGACCAGATTTTTCTTCAGTGAATTCGTGGGATGACGAAGCTCCTTTACAAGTTCAAGCCTCTGAAGTTTTGCTGCTTCCTTACAAGGAAGAGAGTTCCACTGCTGAAGTAGCAAAAGAAGATGATCAGGCCTCCTCATCAATTTTGGGCTCTGCTCAAGAAGATTTTGATGGATTTGGCCTTGGTGATATGTTTGATGAGCCTGAAATCCCTATAGGGCCCATCGCGAGGCCCTCCACGTCGAATGAAGTTGCGGAAAGTAGTTTTAATAGTGAGTCTGATCCTGAGGAAGTTGATAATACCAATGCTCCCGTCTCTGTGGAGAGTTGTCTAACTTATTTCACAAAGCCGGAACTTCTGTCCAACGAAAATGGATATAACTGTGAGAAATGCTCAAAAAGACTACAACAACAAAGGTTGGAAATGAAGAAGCAATCGAAAGTTGCTTGCAAAGCTGTAGCAAATGGATATCAATCTGCAGTAGGGGGTGATACATCTAGTTTCAACGAGGACTCTTCAGTTGAAGTAAAAAATCAAAGAAATTTGAATTTAGCAAATGGTTCTATAAGTTACAGTAGTGGTGAAAGCTCGAATTTGAAAGAAAATGCAGATTGTTCCAGTCGAGATTGCACAAAACCTGTCAATTGCCAGAAAGGCAAGACGGATTCCCTTGCTTTGGGTAAGGATAATGCTAAGGTTGACACAGATATGAATCCTGGCCTAGCATATTCTTCAGGTTGTAATAACACCAGCAATCAAGAGAATTCAGATGATAAATCCAGGTGTTCTCTTTCCAACGATGATCCTAAATGCAGTGAACTTGCAAAAACTAATATTGAGCACTTGAGTTCACAACTATCTGCCGGGAACCAATCAGAAAAAAGTGAGGATGGTGAGATGGATTCTGATTCAACAATTGTGAGTGTGAAAAGAGATGCAACAAAGAGGTTTCTTATTCACAAGGCTCCTCCTATCTTGACAATTCATATGAAGAGGTTCAGTCCTGATGCTCGGGGTCGTTATAGTAAATTGAATGGCCACGTCAGATTCAAGGAAACAATTGATCTTAAACCATACCTGGATACACGGTGTGCTGATAGGGACAAGTGTAATTATCGGTTAATCGGGGTCGTGGAACACTCTGGATCTATGAGAGGAGGCCATTATGTTGCATACGTGAGAGGGGGCAACAGGAAGAGGAGCAATGGGGAAGCTGAGGAAGATGCTTCTGTTTGGTATTATGCAAGTGATGCCGTCGTAAATGAGGTTACCCTGGATCGGGTTCTAGGTTGCGAGGCATACATCCTATTTTATGAGATAACATGA 2949 42.08 MGKKVKKKTNRAPPKEKRVSSSSPRKVPQRSSTTVETADEEVSVVKEKSQCRHLDKCFNLNELSSKLGSSEPISCEDCQESSADRRGSRGKARHGKKKGGTSVDVKTDAKAIWICLQCGHYACGGIGLPTNSQSHAVRHVRQTRHPVVIQFENPQLRWCFSCNTLLPVEKTEENGEQKDGLSNVVKLIRDRSMESSSVDVKNTWHASSEVTTVTKSESSVLSDLDRRNHYVVKGLINLGNTCFFNSILQNLLVIDMLRDHFVKLEECVGPLTIALKKIFIEARTETRMKGSINPRSVFGCISSKAPQFKGYEQHDSHELLRVLLDALSSEELTSRKMTNSKEERNPTPTFVDEMFGGQISSAVCCKECGHTSTVYEPFLDLSLPVPMKKPLAKKVQPASRAKKTKVPPKRNGKTIPKNDKGSDVLPVQIASVPSSSKESSFPSEASASSTTTIMEKTLTSQNVSAVKESEKEVLIENGGECASDNLTWMDFLEPELNAENCDIPTTQDSENNVEVFNSDDSQQSVSGLSMQVSSLHNEPNQRPDFSSVNSWDDEAPLQVQASEVLLLPYKEESSTAEVAKEDDQASSSILGSAQEDFDGFGLGDMFDEPEIPIGPIARPSTSNEVAESSFNSESDPEEVDNTNAPVSVESCLTYFTKPELLSNENGYNCEKCSKRLQQQRLEMKKQSKVACKAVANGYQSAVGGDTSSFNEDSSVEVKNQRNLNLANGSISYSSGESSNLKENADCSSRDCTKPVNCQKGKTDSLALGKDNAKVDTDMNPGLAYSSGCNNTSNQENSDDKSRCSLSNDDPKCSELAKTNIEHLSSQLSAGNQSEKSEDGEMDSDSTIVSVKRDATKRFLIHKAPPILTIHMKRFSPDARGRYSKLNGHVRFKETIDLKPYLDTRCADRDKCNYRLIGVVEHSGSMRGGHYVAYVRGGNRKRSNGEAEEDASVWYYASDAVVNEVTLDRVLGCEAYILFYEIT 982
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25699448 25704770 + Lsi05G018450.1 Lsi05g01845 664337

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01845 982 SUPERFAMILY RING/U-box 50 165 - -
Lsi05g01845 982 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 234 249 IPR018200 GO:0004843|GO:0006511
Lsi05g01845 982 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 913 930 IPR018200 GO:0004843|GO:0006511
Lsi05g01845 982 Gene3D Cysteine proteinases 213 414 - -
Lsi05g01845 982 MobiDBLite consensus disorder prediction 785 800 - -
Lsi05g01845 982 SMART Zf_UBP_1 103 156 IPR001607 GO:0008270
Lsi05g01845 982 MobiDBLite consensus disorder prediction 428 453 - -
Lsi05g01845 982 SUPERFAMILY Cysteine proteinases 232 980 IPR038765 -
Lsi05g01845 982 Gene3D Cysteine proteinases 776 982 - -
Lsi05g01845 982 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 233 982 IPR028889 -
Lsi05g01845 982 MobiDBLite consensus disorder prediction 621 642 - -
Lsi05g01845 982 MobiDBLite consensus disorder prediction 785 808 - -
Lsi05g01845 982 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 3 980 - -
Lsi05g01845 982 MobiDBLite consensus disorder prediction 615 642 - -
Lsi05g01845 982 MobiDBLite consensus disorder prediction 519 550 - -
Lsi05g01845 982 MobiDBLite consensus disorder prediction 68 103 - -
Lsi05g01845 982 MobiDBLite consensus disorder prediction 390 453 - -
Lsi05g01845 982 Pfam Ubiquitin carboxyl-terminal hydrolase 234 979 IPR001394 GO:0004843|GO:0016579
Lsi05g01845 982 ProSiteProfiles Zinc finger UBP-type profile. 49 186 IPR001607 GO:0008270
Lsi05g01845 982 MobiDBLite consensus disorder prediction 395 410 - -
Lsi05g01845 982 Pfam Zn-finger in ubiquitin-hydrolases and other protein 75 165 IPR001607 GO:0008270
Lsi05g01845 982 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 3 980 - -
Lsi05g01845 982 MobiDBLite consensus disorder prediction 24 39 - -
Lsi05g01845 982 MobiDBLite consensus disorder prediction 824 846 - -
Lsi05g01845 982 Gene3D Cysteine proteinases 565 695 - -
Lsi05g01845 982 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 187 IPR013083 -
Lsi05g01845 982 MobiDBLite consensus disorder prediction 1 49 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01845 K11844 USP16_45; ubiquitin carboxyl-terminal hydrolase 16/45 [EC:3.4.19.12] - csv:101204267 1736.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01845 Lsi-Chr5:25699448 Lsi11g00675 Lsi-Chr11:7112378 6.28E-10 dispersed
Lsi05g01845 Lsi-Chr5:25699448 Lsi08g01030 Lsi-Chr8:18894967 4.20E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g908 . . . . . . . . . . Cma06g01231 Cma14g01897 . Car14g01712 . Cpe08g00400 Cpe03g01596 Bhi01g00227 Tan10g0516 . . Hepe05g1764 . . . . . . . . . . . Cone7ag0396 . Lsi05g01845 . . . . . . . . . . . . Cmo06g01250 Cmo14g01949 . . . . . . . . . . . . . . . . . . . . . Csa03g01091 Chy06g00361 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007495 1 2 1 0 1 1 2 1 1 1 1 1 1 1 1 3 1 1 2 1 1 1 1 1 0 1 1 2 2 1 35