Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01848 ATGTACGGACGACCATCCAGTTTCGGTGCTAGCGGCTCCGGCCAGCGGCAGCAACCGCCGCCACAAACGCAGTTTCCAGCAGCGCCGTACCTGAATCCTAATGTCGCGGTTCAAAACCTCAATCATCTTCTTCAAACTCATATCGGGTTTATTCCTCATCAGAACGTTAACTTCCCTATGCAGAACTCGAACTTGCCGATGCAAAATCTCGGCTTTCAGTTTTCACAACCTTCCAATCCTGGTTTACACTTTCCACAAGCTCGAAATCCCGGCTCCCACTCTTCACAATCTCCCAATCCGGGTTTCCGTTTTCCACAACCTTCCAAAACAGGTCAACAGCCGCAAAGTTCGACTACGAAGCCGGGAGGAGGCATCTTGATGATCAACCACACTGTAGCCAAAGCACATAGCGAACTTCTTGCGGCCGGGGAAAGCATCTCAGCTTGGAAGGTCTCGCAATCAGCACTTTCAATTCTCCAGGTTGATTCCTGGGATTCTTTAGGATACCGTATGCAGGAAATCGATGCCCTTCACCGCCTCATTATGACGGAAGGGAAGATCAATTCATTTATTCACTGCTTTGTGGGGGTGAGAAGAATTACTACGTTATATGAATTGGAGAAGGCTATATGCAAGGATGAGGGAGTTAGGAAATTTGAAGAGTTGAGACTGGGCCCTTTTCTGCATCATCCTCTTGTTTTGCATTATTTCTCAGTGAATTCTGAGGTAACTGAAGTATTTAAAATAAAGAGTGAGGATATTATTTCTTTTCTATCCGAGTTCATGGATCTGGATGCTTGTAGTAATAAAAATATTACGGTCGAAGACTTTTTGGACTTCATTTCCAGGAAGCGATCAGTCACAAAGAGAGAAATGCTGGGAATTCGTGTTCAAAACTTGGGGACCCATATTTCTGTTATTCGGAAAGCTAGGAGATCAGAAGATGATATTTTCAGTAAGTATCTGACAAAATCTGATGAGAAACGCCAGAAGCGGCCTCTTTTCTCATTGCAGAAGCAAAAGTTAGATGAGCGTTTTAGTGCAATATCCCAGCGAGTTGAATCATTTTCCTCTGTTCACAAAGACTTTTGTGGCAAGCATGTTAGATTTGATTCTTCAAGCTCAGAAGATGAAGGCAGTGATGATAACGCACATGAGAAAAAAAAGAATGGCACTGACTCAAGCTCTGATCTAAAGATTTCATTGCAAAGCAATAAAAGTTCCGATCGTTCAAGTAGCTGTCCTTACCCATCTGCAACTGAAGAGATGACGCGGCTTGGGTTGAAAGGTGAAGTAAGTGGCCATGCCACTCCCGTTGGCAGCCAAAAACACAGTATAGGCAATAGTACATCCAAAAGGAAAAGAAGATCTAGACATCAAAGGCACACTACTTTTGGATCCCCAACATCAGGTAAAAAAGTTAAGGTAGAATCCAGCATCCTCGACAAAGTTAGTTTTGATAATTCTGATGAAGGTGGTGGCGTTGAAGCTGAATATAAAATTACAAACAATTCTTTGAGGATGTTCATCACAACATGGAAGGAAGGGTGTAGAGATATGACTGTGGCTGAGGTGTGGGGAGCTCTGAGGTTGCTACTTGGTCCAATGTGGCAACTGTTGGGGGAGCCTTGTGAAAACTGGCCCTATGGATGGGGAGCTTTGGTGTTGGTGGGAATAAAGAGGGTGGAAGCTGAGGAAGTAAAACCAGTCTCGGTTTCTAGAAAGAAAAAGTCTGTTGGGAAGAAGTCTTTGGGGGAAGGGAGCAACAAAGTTGTGAGAGAGTTGCGGAAGCTCGAATGCTCGGTCAACTATGAGCGGAAGAAGGCTTCTAAGGAAGCGGGCATCACCCTTTCTCAATGTTGA 1863 44.44 MYGRPSSFGASGSGQRQQPPPQTQFPAAPYLNPNVAVQNLNHLLQTHIGFIPHQNVNFPMQNSNLPMQNLGFQFSQPSNPGLHFPQARNPGSHSSQSPNPGFRFPQPSKTGQQPQSSTTKPGGGILMINHTVAKAHSELLAAGESISAWKVSQSALSILQVDSWDSLGYRMQEIDALHRLIMTEGKINSFIHCFVGVRRITTLYELEKAICKDEGVRKFEELRLGPFLHHPLVLHYFSVNSEVTEVFKIKSEDIISFLSEFMDLDACSNKNITVEDFLDFISRKRSVTKREMLGIRVQNLGTHISVIRKARRSEDDIFSKYLTKSDEKRQKRPLFSLQKQKLDERFSAISQRVESFSSVHKDFCGKHVRFDSSSSEDEGSDDNAHEKKKNGTDSSSDLKISLQSNKSSDRSSSCPYPSATEEMTRLGLKGEVSGHATPVGSQKHSIGNSTSKRKRRSRHQRHTTFGSPTSGKKVKVESSILDKVSFDNSDEGGGVEAEYKITNNSLRMFITTWKEGCRDMTVAEVWGALRLLLGPMWQLLGEPCENWPYGWGALVLVGIKRVEAEEVKPVSVSRKKKSVGKKSLGEGSNKVVRELRKLECSVNYERKKASKEAGITLSQC 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25714550 25719484 + Lsi05G018480.1 Lsi05g01848 664340

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01848 620 MobiDBLite consensus disorder prediction 395 419 - -
Lsi05g01848 620 MobiDBLite consensus disorder prediction 370 472 - -
Lsi05g01848 620 PANTHER WU:FJ29H11 30 313 - -
Lsi05g01848 620 MobiDBLite consensus disorder prediction 68 124 - -
Lsi05g01848 620 PANTHER - 30 313 - -
Lsi05g01848 620 PANTHER WU:FJ29H11 335 517 - -
Lsi05g01848 620 MobiDBLite consensus disorder prediction 370 394 - -
Lsi05g01848 620 MobiDBLite consensus disorder prediction 68 125 - -
Lsi05g01848 620 PANTHER - 335 517 - -
Lsi05g01848 620 MobiDBLite consensus disorder prediction 448 462 - -
Lsi05g01848 620 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01848 - - - mcha:111016138 734.947
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01134 Lsi-Chr1:9480954 Lsi05g01848 Lsi-Chr5:25714550 6.09E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g994 . . . . . . . . . . . Cma14g01899 Car06g01063 Car14g01700 Sed02g1510 Cpe08g00402 Cpe03g01599 Bhi01g00222 Tan10g0511 Cmetu06g0585 . Hepe05g1766 . Lcy11g1779 . . . . . . . . . . . Lsi05g01848 . . Cme06g00377 . . Bda11g00344 . . Bpe13g00862 . Bma06g01278 . Cmo06g01248 Cmo14g01952 . . . . . . . . . . . . . Cla05g00343 Cam05g0374 Cec05g0378 Cco05g0379 Clacu05g0368 Cmu05g0353 Cre05g0417 . Csa03g01089 Chy06g00358 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014868 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 7 2 1 0 0 0 0 11