Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01853 ATGGAATGTATATGGAACTTGCAACAAGTTAAAATAGATTGCTCGATTTCGTTTGAGAGTACGCGGAGTTCACAAGTACCAAAATTTGGCAAGTGGGATGATGGGGAAGATGTTCCGTATACAACCTATTTTGACAATGCAACAAAAGCTAAATTCGAGAGGATGAATCCGAACGATCCTTCTCTTCACCAAGAGGAGATTTCAGACACAGTAAGGTCAAACTATGAGCAACAAAAAGTCAAAGAAGGTGGTGTTGTGAGGAGGCAAACTGAGTCTCCATTACACCATGATGCTCTGGAAATGCCTGGTTGGGATTATAACGGTAAAAAGTCAGTGAAGAGTCGGAGTCAACAAGCATCAAGGCCAAAGCACACACAAGAAGACTTAAGCTTGGAGGATGGTAACATGAAGAAACATCTTGATTCCCCTTTGGACCATCAATCGAGGGGTCAGGTTAGCTTCAACTCGCCTCTTCATCAACGTCAAGGCAACAACACGACCAGTAATTCATCAAAAACGACTATAAGAAATGGCACAGGTTCTGACTGCAGCATAGAAAATTCACCTCTCCATCCGCGACAGCATCCAAGGACTGAAGCAAAAACTGTTGTACCATCTTCGCCATTACGGGAAAGAAGGGGTTCAAGTTCGCCTAAAGGAGGTAGTCATGATGGTTTAGCTCCCTTGACTCCCGGAAGATCACGTCAACGATCTGTTCCTCGGGGCAATGAAACTCCTGATCGTGGTGCCACTGTCCCAAAATTTGGTGACTGGGATGAGAGCGATCCATCGTCATCTGAGAACTACACTAATATTTTCACCAGAGTGCGCGAGCAGAGACAAACTGAGGACGGAAGTTTGCCAGCTGGGACCAATGTGTCTCGTAGTCGTAATAGTTCTGGTGCTGAAAATTCTAAGAGATGTGGCTGTTTTCCATGGGGAAAATGA 948 44.83 MECIWNLQQVKIDCSISFESTRSSQVPKFGKWDDGEDVPYTTYFDNATKAKFERMNPNDPSLHQEEISDTVRSNYEQQKVKEGGVVRRQTESPLHHDALEMPGWDYNGKKSVKSRSQQASRPKHTQEDLSLEDGNMKKHLDSPLDHQSRGQVSFNSPLHQRQGNNTTSNSSKTTIRNGTGSDCSIENSPLHPRQHPRTEAKTVVPSSPLRERRGSSSPKGGSHDGLAPLTPGRSRQRSVPRGNETPDRGATVPKFGDWDESDPSSSENYTNIFTRVREQRQTEDGSLPAGTNVSRSRNSSGAENSKRCGCFPWGK 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25763855 25768567 + Lsi05G018530.1 Lsi05g01853 664345

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01853 315 MobiDBLite consensus disorder prediction 54 315 - -
Lsi05g01853 315 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 23 312 IPR040387 -
Lsi05g01853 315 MobiDBLite consensus disorder prediction 262 276 - -
Lsi05g01853 315 MobiDBLite consensus disorder prediction 146 188 - -
Lsi05g01853 315 MobiDBLite consensus disorder prediction 56 95 - -
Lsi05g01853 315 MobiDBLite consensus disorder prediction 120 145 - -
Lsi05g01853 315 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 246 282 IPR008700 -
Lsi05g01853 315 MobiDBLite consensus disorder prediction 284 305 - -
Lsi05g01853 315 PANTHER RPM1-INTERACTING PROTEIN 4 23 312 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01853 K13456 RIN4; RPM1-interacting protein 4 - csv:101211635 515.383
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02100 Lsi-Chr2:27187816 Lsi05g01853 Lsi-Chr5:25763855 4.02E-12 dispersed
Lsi05g00505 Lsi-Chr5:6340681 Lsi05g01853 Lsi-Chr5:25763855 4.69E-07 dispersed
Lsi05g01853 Lsi-Chr5:25763855 Lsi10g00039 Lsi-Chr10:599672 5.09E-06 dispersed
Lsi05g01125 Lsi-Chr5:19036814 Lsi05g01853 Lsi-Chr5:25763855 4.78E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g946 . . . . . . . . . . . . . Car14g01704 Sed02g1520 . Cpe03g01603 Bhi01g00211 Tan10g0505 Cmetu06g1239 . . . . . . . . . . . . . Cone7ag0404 . Lsi05g01853 . . Cme06g00373 . . Bda11g00342 . . Bpe13g00864 . Bma06g01276 . . Cmo14g01956 . . . . . . . . . . . . . Cla05g00337 Cam05g0370 Cec05g0374 Cco05g0375 Clacu05g0364 Cmu05g0349 Cre05g0413 . Csa03g01084 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003340 2 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 1 1 1 9 1 1 49