Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01855 ATGAGCATTCAAAGTTCAAATGATCTACGTGATTGGAGTGCAAGAGTTGTTGAGAGAAGAACGGTATTGGACTTCGACTTAAATTGTCCACCCCCAGATGAGTGCATCGATCCAACTGGCCCTCGTGACGAAGCAGCACAATACTATAGTCATTACCAAGGACAAGCTACAGACGCTATCGATGAGGACATTGCTATAATCTCCCCTAGGAAGTTTGCTGAAGCCAGGAAGAATTTTCGAAGAAATCACTTTGAGAGTAGTTGCGGTGTAGTCATCAGACGTAACGGCAACACAGAAGTTTATGGTGCTCTCTCAGATGTAACAAGTTGGCCCCCTTTCACAATTTGGTCGCCTCTTACAATTAGCAATAATGTATCCATACAGGAACAAACACTTCACAACTTGGACCTTCGCCTTAGCTGTGAAAGCAGTAGTAGGGCCAATAAGGCAACAACTGACTCTGACACTGCACATGCACTAAATAGTAGTATCCAACCTACAGATCGGACTTTGCGGTGTGCGATCTGCATAGAACCATTGGTCGAAGAAACGACAACGAAATGTGGGCACGTTTTCTGCAGGAATTGCATCGAAACGGCCATAGCTACCCAGCATAGATGTCCCATATGTCGGCCCAAAGCCCAATCTTCAAGCTCTCATTTTCGGACGAATAACGCGAGGAATCTCTCTCGGTTCTGTGCAAATTCCGGCAGAAGGAGGAAAATGATGCCAGAATCGATGGAAGCTACACCGTCTGTACCTCCAAGCCTCGATCTCCAAACAGTTCGCAGCGAGCTAGAAGAGTTGCAGAGATCTTTGGAGGAAAATGAAGCTTATACGACGGATTCATTAGGTTCTGAGAAGTTACTGAAGGAGTGTGCTCTCCATCTCGAGAGCAGACTACAGCAGATTCTGTCCGAATACTCTAACGTTGATAGTTTCTTGGGAATTGATGATTTAGATGCGTACATTGAACACATGAAAGAGGAGCTTGTCGCGGTGGAAGCTGAAAGCAGCAAAATCTCCAATGAGATCGAGGATCCTGAAGAGGCAACACTTAATTGCAGCTCTATGAATGGTGAAGATCAGATGAACATGATAGTCAACCGTGAATGCAATGCGTTTGAGGTTTTGGAACTTGATAGTCAGATCGAAAAGAACAAAAAAGTCCTAAAATCTTTGCAGGAAGTAGATGAGATATTTAAAAGGGAGGTGCCATGGTGCCACTCTCAATTAAGGGAGAAATTAGAAGTTTGGAGCGCCATGATTTTTCAAGGAAGCGACATGGTGTGTGCTGTAGCACCATTGTGCCTTGTGGTAGCACCCTTTTCTTGTTTTTTTCTTCGTTCTGCCATAGCACCACGGTTTTGTAACAAGCACCCAGGTGCTATTCCCTCGGATATTAAGCTTCTACCATCTCTTTTGGATGTTATTGAGCAGGTTGAGGACACAATTGGTGGTATGATGGTCATTGATGTTGCTGATAATTTCATTAGATTGTCATTACGTACACACATTCCGAACTTGGAAGATTTTTCAACCTTACAAAGACTTGAAGGTACGATTGAGAAATCTGAATTGGATCACGAGTTGCTAATAGAAGTTTTGGAGGGGACAATGGAGTTAAAGAATGCTGAGATCTTTCCTGGTGATGTCCATTTGCACGATATTATCACTGCTTCAAAGTCAATCGGCAATTCTTCATTGCAATGGTTTGTGAGAAAAGTACAAGATAGGATTGTTTTGTGTACTCTTAGGCGGTTTGTTGTGAAGAGTGCAAACAAATCAAGTCATTCCTTTGAGTATTTAGATCAAGACGAAACGATAATATGTAGTATGATTGGAGGGGTTGATGCGTGTATTAAGGTGACTCAAGGTTGGCCATTAGCCGAATCTCCTCTGAAACTTGTATCACTCAAGAGCTCAGATCATTATACAAAAGGAGTTTCTTTAAGCCTCATTTGCAAGGTGGAGAAAATGGCAAATTCCTTGGATGCTCGTATTCGCCGAAATCTATCCAGCTTTGCGGACGCTGTTGAAAAAATATTGAAGGCGCAAATGCATTTAGAACTCCAAGCTGACAGTGGTTAA 2091 42.9 MSIQSSNDLRDWSARVVERRTVLDFDLNCPPPDECIDPTGPRDEAAQYYSHYQGQATDAIDEDIAIISPRKFAEARKNFRRNHFESSCGVVIRRNGNTEVYGALSDVTSWPPFTIWSPLTISNNVSIQEQTLHNLDLRLSCESSSRANKATTDSDTAHALNSSIQPTDRTLRCAICIEPLVEETTTKCGHVFCRNCIETAIATQHRCPICRPKAQSSSSHFRTNNARNLSRFCANSGRRRKMMPESMEATPSVPPSLDLQTVRSELEELQRSLEENEAYTTDSLGSEKLLKECALHLESRLQQILSEYSNVDSFLGIDDLDAYIEHMKEELVAVEAESSKISNEIEDPEEATLNCSSMNGEDQMNMIVNRECNAFEVLELDSQIEKNKKVLKSLQEVDEIFKREVPWCHSQLREKLEVWSAMIFQGSDMVCAVAPLCLVVAPFSCFFLRSAIAPRFCNKHPGAIPSDIKLLPSLLDVIEQVEDTIGGMMVIDVADNFIRLSLRTHIPNLEDFSTLQRLEGTIEKSELDHELLIEVLEGTMELKNAEIFPGDVHLHDIITASKSIGNSSLQWFVRKVQDRIVLCTLRRFVVKSANKSSHSFEYLDQDETIICSMIGGVDACIKVTQGWPLAESPLKLVSLKSSDHYTKGVSLSLICKVEKMANSLDARIRRNLSSFADAVEKILKAQMHLELQADSG 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25784852 25797237 + Lsi05G018550.1 Lsi05g01855 664347

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01855 696 Coils Coil 259 279 - -
Lsi05g01855 696 Pfam Zinc finger, C3HC4 type (RING finger) 172 210 - -
Lsi05g01855 696 Coils Coil 317 344 - -
Lsi05g01855 696 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 140 252 IPR013083 -
Lsi05g01855 696 SUPERFAMILY RING/U-box 172 215 - -
Lsi05g01855 696 SMART ring_2 173 210 IPR001841 -
Lsi05g01855 696 PANTHER RNA-DIRECTED DNA POLYMERASE (REVERSE TRANSCRIPTASE)-RELATED FAMILY PROTEIN 352 403 - -
Lsi05g01855 696 PANTHER RNA-DIRECTED DNA POLYMERASE (REVERSE TRANSCRIPTASE)-RELATED FAMILY PROTEIN 474 694 - -
Lsi05g01855 696 PANTHER RNA-DIRECTED DNA POLYMERASE (REVERSE TRANSCRIPTASE)-RELATED FAMILY PROTEIN 248 356 - -
Lsi05g01855 696 ProSiteProfiles Zinc finger RING-type profile. 173 211 IPR001841 -
Lsi05g01855 696 ProSitePatterns Zinc finger RING-type signature. 188 197 IPR017907 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01855 - - - csv:101211137 555.444
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01855 Lsi-Chr5:25784852 Lsi02g01358 Lsi-Chr2:18207574 8.30E-06 dispersed
Lsi05g00488 Lsi-Chr5:6181908 Lsi05g01855 Lsi-Chr5:25784852 7.78E-07 transposed
Lsi05g01126 Lsi-Chr5:19043890 Lsi05g01855 Lsi-Chr5:25784852 4.87E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g942 . . . . . . . . . . . . Car06g01057 Car14g01705 Sed02g1523 Cpe08g00409 Cpe03g01605 Bhi01g00203 Tan10g0501 Cmetu06g1022 . . . . . . . . . . . . . Cone7ag0406 . Lsi05g01855 . . Cme06g00370 . . Bda11g00340 . . Bpe13g00866 . . . . Cmo14g01959 . . . . . . . . . . . . . Cla05g00334 Cam05g0366 Cec05g0370 Cco05g0371 Clacu05g0361 Cmu05g0346 Cre05g0410 . Csa03g01082 Chy06g00351 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009546 1 2 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 33