Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01860 ATGCAGTGCTCCGATTTTACCTTATCAGGGAGCGATTCACGCTTCTACATCCCTTCGAACCCTAGCACTACCGGCCGCCGACCAATTTCCGGCCACCGATCTCGGATATTCTTTCCCAACACCCTGCCGTGCAATTCGACGCGCTTGCCGTCTCTTTCAATCAGAGCCAAGGCCTCGTACAACGAAGGAATCCTCTCCTCCGAGGTCGCCGAAGGCTCCTTCTACGATTTGCTCGGTATATCTCAGTCCGGATCCTTGGCGGAAATCAAGCACGCGTACAAGCAGCTCGCTCGGAAGTACCATCCGGACGTGTCGCCGCCGGGCCGTGCGGAGGAGTATACGAAGACGTTCATTCGTGTTCAGGAGGCGTACGAGACATTGTCGGATCCGAGGAGGAGAGCGCTGTATGATAGAGATATGGTTGGAGGCCTTCAAGTCGCGTTCTCTGCTCGGAGACGATACGACGCCGATGAGGAAGTTCCAGAGAGAAGTGGATGGAAAAATTGCTGGCAAGCTCAGATCTCAGAATTGAAGAGAAGAAGCATGGACAAGGATTCGAGACAAAATATGTCATGGGGAGCTCGAATGCGCCGGCAAATGAATGAACAGGTCTGA 615 53.66 MQCSDFTLSGSDSRFYIPSNPSTTGRRPISGHRSRIFFPNTLPCNSTRLPSLSIRAKASYNEGILSSEVAEGSFYDLLGISQSGSLAEIKHAYKQLARKYHPDVSPPGRAEEYTKTFIRVQEAYETLSDPRRRALYDRDMVGGLQVAFSARRRYDADEEVPERSGWKNCWQAQISELKRRSMDKDSRQNMSWGARMRRQMNEQV 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25829776 25831793 + Lsi05G018600.1 Lsi05g01860 664352

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01860 204 ProSiteProfiles dnaJ domain profile. 73 140 IPR001623 -
Lsi05g01860 204 PANTHER CHAPERONE PROTEIN DNAJ 20, CHLOROPLASTIC 1 203 - -
Lsi05g01860 204 SUPERFAMILY Chaperone J-domain 73 146 IPR036869 -
Lsi05g01860 204 CDD DnaJ 74 129 IPR001623 -
Lsi05g01860 204 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 1 203 - -
Lsi05g01860 204 SMART dnaj_3 72 132 IPR001623 -
Lsi05g01860 204 Pfam DnaJ domain 74 137 IPR001623 -
Lsi05g01860 204 ProSitePatterns Nt-dnaJ domain signature. 117 136 IPR018253 -
Lsi05g01860 204 PRINTS DnaJ domain signature 112 132 IPR001623 -
Lsi05g01860 204 PRINTS DnaJ domain signature 132 151 IPR001623 -
Lsi05g01860 204 PRINTS DnaJ domain signature 75 93 IPR001623 -
Lsi05g01860 204 PRINTS DnaJ domain signature 93 108 IPR001623 -
Lsi05g01860 204 Gene3D DnaJ domain 65 163 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01860 - - - cmos:111452997 352.829
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi05g01860 Lsi09g01122 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01860 Lsi-Chr5:25829776 Lsi10g00475 Lsi-Chr10:6875556 3.36E-18 dispersed
Lsi02g00629 Lsi-Chr2:5596998 Lsi05g01860 Lsi-Chr5:25829776 4.74E-13 transposed
Lsi03g00776 Lsi-Chr3:11124055 Lsi05g01860 Lsi-Chr5:25829776 4.07E-19 transposed
Lsi03g01300 Lsi-Chr3:23828297 Lsi05g01860 Lsi-Chr5:25829776 4.73E-12 transposed
Lsi04g00795 Lsi-Chr4:7510059 Lsi05g01860 Lsi-Chr5:25829776 5.09E-09 transposed
Lsi05g01860 Lsi-Chr5:25829776 Lsi09g01122 Lsi-Chr9:18005613 1.51E-75 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g931 . . . . . . . . . Cmo17g00091 . Cma14g01907 Car06g01052 Car14g01708 Sed02g1527 Cpe08g00413 Cpe03g01608 Bhi01g00197 Tan10g0493 Cmetu06g2051 Lac12g2015 Hepe05g1777 . Lcy11g1792 . . . . . . . Cone14ag0245 Cone15ag0262 Cone7ag0410 . Lsi05g01860 . . Cme06g00366 . . Bda11g00324 Bda13g00476 . Bpe13g00869 Bma02g01194 Bma06g01272 Sed09g0169 Cmo06g01237 Cmo14g01962 . Cma17g00085 . Car17g00080 Cpe12g00078 . Bhi12g01476 Tan06g2282 Cmetu05g1668 . Hepe03g0378 . . Cla05g00330 Cam05g0360 Cec05g0364 Cco05g0366 Clacu05g0357 Cmu05g0342 Cre05g0405 Lsi09g01122 Csa03g01076 Chy06g00346 Cme05g00736
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002087 3 2 2 2 2 2 4 2 1 1 1 1 4 2 1 4 1 3 4 2 1 2 2 2 2 2 2 3 2 1 63