Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01869 ATGGAGGCAGCTGCTGGCGGCGGAGGCACCGGCGGCGCTGGTCCGGCGCCGTTTCTCATCAAGACCTACGATATGGTTGACGACTCGGCCACCGACGAGATCGTCTCCTGGACCTCTTCGAAGAAGAGCTTTGTGGTCTGGAATCCCCCTGAATTCGCTCGCCTTCTTCTCCCAACGTTTTTCAAGCATAGTAACTTCTCCAGCTTCATTCGGCAGCTTAATACCTATGGGTTTCGAAAGATTGATTCTGAGAAGTGGGAATTTGCAAATGAAGATTTCATAAAAGATCAAAAGCATCTGCTGAAAAACATCCACCGTCGAAAACCAATTCACAGTCACAGTAATCCTCAAGGATCTCATGTAGATCCAGAAAGAGCTGCTTTTGAAGATGAAATAGAGAGGCTATCACGTGAAAAAACTACACTTGAAACCAATATATCAAGATTCAAACAGCAAAAATCGACTGCTAAACTTCAGTTGCAAGATCTAACGGTGAAGGTGGAAAGCATGGAAAAAAGGCAGAAGAATTTATTGGCATTTTTAGAAAAGGCTGTTCAGAACCCTTCTTTTGTTGAACATCTTGCTCGAAGGGTCGAAACTATGGACTTTACAGCATTTAAAAAAAAGAGACGACTACCTTCGGCTGATATTTCACAGCCAGTCATAGAAAATAGTTTTTTGGATAACCATAGTAGTTCCAGATCTGAGTCTGGTAATATTTTTCATCAAGATTTTTCACATAAGCTGAGATTAGAAACTTCATGTGCATCAGATATCAACTTAATTTCACGTAGCACCCAGAGCTCAAATGAAGAAGGGGGAAGTTCACAAAGACTTATGTCAAAACTTGATGCTAGAGCTGTCCAAGAAAATCTTCATTTTGCAGCTGAAACATTAGATCTCTCAGACACTGGGACATCATTTGTATTGAAGAGGGATTCATCTTTGTCAGGGAAATCGCCTAATGACGAGAGTCCAAGTCTACACTCATTGCAACCAAGTGTTAGTTCCAAAGAAGATGGAGAAAGTCACATCTCATGCCAATTGAATCTCACTCTCGCATCTTCTTCCCTGCGAATCAACGACACTGCTTGTTCAGTTCGAGTGCCACAACTGGGTCAGAATGTTCGAAAATCCCCAGATTCAAAGGTAAGTTCAAATGGAAAAGAATCAGATGTGAGACTGTTCACTAAAAACATAAATCTCGACGAGGGGACTACTCCGGTTTATCCTCAAGAGACCTTGAATAACAATAACGGACCTCCAGCCGCTCCTATCAGGGTCAATGATGTTTTCTGGGAACAGTTCCTTACTGAAAGACCGGGTTGTCCCGAGAGTGAAGAGGCAAGTTCTAATTACAAGGCAAATTTATATAAGGAGCCAGATGATGGGAGATCGGGCCTATCTCTTTGA 1413 42.53 MEAAAGGGGTGGAGPAPFLIKTYDMVDDSATDEIVSWTSSKKSFVVWNPPEFARLLLPTFFKHSNFSSFIRQLNTYGFRKIDSEKWEFANEDFIKDQKHLLKNIHRRKPIHSHSNPQGSHVDPERAAFEDEIERLSREKTTLETNISRFKQQKSTAKLQLQDLTVKVESMEKRQKNLLAFLEKAVQNPSFVEHLARRVETMDFTAFKKKRRLPSADISQPVIENSFLDNHSSSRSESGNIFHQDFSHKLRLETSCASDINLISRSTQSSNEEGGSSQRLMSKLDARAVQENLHFAAETLDLSDTGTSFVLKRDSSLSGKSPNDESPSLHSLQPSVSSKEDGESHISCQLNLTLASSSLRINDTACSVRVPQLGQNVRKSPDSKVSSNGKESDVRLFTKNINLDEGTTPVYPQETLNNNNGPPAAPIRVNDVFWEQFLTERPGCPESEEASSNYKANLYKEPDDGRSGLSL 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25912314 25915116 + Lsi05G018690.1 Lsi05g01869 664361

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01869 470 Gene3D - 13 108 IPR036388 -
Lsi05g01869 470 Coils Coil 125 173 - -
Lsi05g01869 470 MobiDBLite consensus disorder prediction 442 470 - -
Lsi05g01869 470 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-5 10 467 - -
Lsi05g01869 470 MobiDBLite consensus disorder prediction 311 341 - -
Lsi05g01869 470 SUPERFAMILY Winged helix DNA-binding domain 14 107 IPR036390 -
Lsi05g01869 470 Pfam HSF-type DNA-binding 18 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lsi05g01869 470 PRINTS Heat shock factor (HSF) domain signature 18 41 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lsi05g01869 470 PRINTS Heat shock factor (HSF) domain signature 56 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lsi05g01869 470 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lsi05g01869 470 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 467 IPR027725 -
Lsi05g01869 470 ProSitePatterns HSF-type DNA-binding domain signature. 57 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lsi05g01869 470 SMART hsfneu3 14 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01869 K09419 HSFF; heat shock transcription factor, other eukaryote - csv:101203054 860.136
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00833 Lsi-Chr2:7816868 Lsi05g01869 Lsi-Chr5:25912314 1.15E-64 dispersed
Lsi05g01869 Lsi-Chr5:25912314 Lsi07g01178 Lsi-Chr7:17282040 2.48E-67 dispersed
Lsi05g01869 Lsi-Chr5:25912314 Lsi05g00963 Lsi-Chr5:16808481 1.77E-59 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g869 . . . . . . . . . . . . . . . Cpe08g00417 . . . . . . . . . . . . . . . . . . . Lsi05g01869 . . . . . . Bda13g00019 . . Bma02g00734 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g916 . . . . . Bpe14g00850 . . . . Cma06g01196 Cma14g01914 . Car14g01712 Sed12g0352 Cpe08g00417 Cpe03g01613 Bhi01g00185 Tan10g0484 Cmetu06g1519 . . . Lcy11g1801 . . . . . . . . . . . Lsi05g01869 . . Cme06g00359 . . . Bda13g00480 . . Bma02g01198 . . Cmo06g01233 Cmo14g01968 . . . . . . . . . . . . . Cla05g00322 Cam05g0353 Cec05g0355 Cco05g0358 . Cmu05g0334 Cre05g0397 . Csa03g01069 Chy06g00340 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009917 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25417 PF00447 HSF_DNA-bind 3.20E-30 CL0123 Lsi TF