Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01914 ATGGATGCAGTGAGTTGGGCTGTGGCAGCGGCGGTGACGGCGGTTGCTGCTGCGGCGGCGGCGTTTGCGGCGGTGAAATGGGCGGCGAAGAGTTTGAATGAGTGGATATATGAGGCAAAATTAGGTGACCGGCGGATGGCTCTGCCGCCGGGGGATTTGGGATGGCCTATAATTGGAAATATGTTGGGTTTTCTTAGAGCCTTCAAATCTAAGAACCCTGAAACCTTCATTGATAGCTATGTTTCCAGGTTTGGGAAAATCGGCGTCTACAAGGTTCATTTGTTTGGAAACCCTAGCGTGGTCGTGACGACGCCGGAGACATGCCGGAAAGTTCTTACAGACGACGAGGCCTTTCAGCCCGGTTGGCCACGCGCGGCCGTAGAGCTCATCGGAAAGAAGTCCTTCATCGAAATGCCGGTCGAGGAACACAAGCGCCTCCGCCGCTTAACCTCTGCTCCAGTGAACGGCTTCGAGGCTTTGAGCAATTACATTCCTTACATCGAAGAGAATGTATTGAAATCGTTGGATAAATGGTCCAATATGGGGCCAATCGAATTCTTAACACAACTTCGTAAGCTCACATTCACCATTATCATGTACATTTTCCTTAGCGCGGAGAGCGAACCGGTAATGGAGGCGTTAGAGAAGGAGTACACTCGGCTGAACTATGGTGTTCGAGCCCTGAGAATTAACATACCTGGATTTGCTTACCACAAAGCACTCAAGGCTCGAAAGAATCTTGTGGCTGCGTTGCAAGCAATTGTGACTGATCGAAGAAACCGAAGATTGGACAAATGGGCGCTGAAGAGGAAGGACATGATGGACGCTCTGATTGATGTTGAAGATGAAAATGGCAGAAAATTGACTGATGAGGAGATCATTGATATTCTAGTGATGTACTTGAATGCAGGCCATGAATCTTCAGGCCATACCATGATGTGGGCAACTATTTTGTTGAATCAACACCCAGAAGTTCTCAAGAAAGCTAAGGGTTGGAAAGTGTTGGCTTGGTTTAGAAGTATTCACTATGACAATGAAGTTTACCCAGATCCAAAGAAATTTGATCCTTCAAGATGGGATGGATTTATCCCAAAAGCAGGAGAGTTTCTTCCATTTGGAGCAGGAAGCAGGCTGTGCCCAGGAAATGATCTAGCCAAATTGGAGATCTGCATTTTCATTCACTATTTTCTCCTCAATTACAAGCTTGAATGGCTGACCCCTGATTGTCCAATTTTGTATCTGCCCCATTCAAGGCCAAAGGACAATTGCTTGGCTAAAATCAGTAAGAATTCCAGCACTGTTGTGTAA 1308 46.87 MDAVSWAVAAAVTAVAAAAAAFAAVKWAAKSLNEWIYEAKLGDRRMALPPGDLGWPIIGNMLGFLRAFKSKNPETFIDSYVSRFGKIGVYKVHLFGNPSVVVTTPETCRKVLTDDEAFQPGWPRAAVELIGKKSFIEMPVEEHKRLRRLTSAPVNGFEALSNYIPYIEENVLKSLDKWSNMGPIEFLTQLRKLTFTIIMYIFLSAESEPVMEALEKEYTRLNYGVRALRINIPGFAYHKALKARKNLVAALQAIVTDRRNRRLDKWALKRKDMMDALIDVEDENGRKLTDEEIIDILVMYLNAGHESSGHTMMWATILLNQHPEVLKKAKGWKVLAWFRSIHYDNEVYPDPKKFDPSRWDGFIPKAGEFLPFGAGSRLCPGNDLAKLEICIFIHYFLLNYKLEWLTPDCPILYLPHSRPKDNCLAKISKNSSTVV 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26348060 26358460 + Lsi05G019140.1 Lsi05g01914 664406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01914 435 Gene3D Cytochrome P450 39 328 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g01914 435 PANTHER ENT-KAURENOIC ACID OXIDASE 2 330 423 - -
Lsi05g01914 435 PANTHER ENT-KAURENOIC ACID OXIDASE 2 19 330 - -
Lsi05g01914 435 SUPERFAMILY Cytochrome P450 44 427 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g01914 435 PANTHER CYTOCHROME P450 26 330 423 - -
Lsi05g01914 435 PANTHER CYTOCHROME P450 26 19 330 - -
Lsi05g01914 435 Pfam Cytochrome P450 49 329 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g01914 435 Pfam Cytochrome P450 330 405 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g01914 435 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 372 381 IPR017972 GO:0005506|GO:0016705
Lsi05g01914 435 Gene3D Cytochrome P450 329 426 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g01914 435 PRINTS E-class P450 group I signature 369 379 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g01914 435 PRINTS E-class P450 group I signature 379 402 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g01914 435 PRINTS E-class P450 group I signature 337 361 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g01914 435 PRINTS P450 superfamily signature 303 320 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g01914 435 PRINTS P450 superfamily signature 370 379 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g01914 435 PRINTS P450 superfamily signature 379 390 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01914 Lsi-Chr5:26348060 Lsi07g01222 Lsi-Chr7:17828217 2.70E-125 dispersed
Lsi02g02057 Lsi-Chr2:26719599 Lsi05g01914 Lsi-Chr5:26348060 6.48E-81 transposed
Lsi05g00062 Lsi-Chr5:1257432 Lsi05g01914 Lsi-Chr5:26348060 3.39E-47 wgd
Lsi05g01914 Lsi-Chr5:26348060 Lsi07g01220 Lsi-Chr7:17786540 6.92E-100 wgd
Lsi05g01914 Lsi-Chr5:26348060 Lsi09g01869 Lsi-Chr9:27505028 1.45E-161 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01914 K04123 - csv:101221667 706.827