Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01920 ATGGCGGGCTTAGACTTGGGCTCTGCTTCTCACTTTGTTCATCAACTTCAGCACCGTTCCGTGGATCTCCACCTACAGCATCCGACGGATGTAGACGACGGCTCCGACCACCAACCGAACTCCGGCGGCGAAATCGTCGCCCGACGGTCCAGAGGCAGACCGGCCGGTTCTAAAAATAAACCGAAGCCACCGGTTATTATTACCAGAGAAAGCGCCAATACCCTCCGGGCCCACATCTTGGAAGTCAACTCCGGTTGCGATGTCTTTGACTCCGTCGCCACTTATGCCCAGAAGCGCCAGCGTGGCATCTGCATCTTGAGCGGCACCGGCTCCGTCACCAACGTTACCTTACGGCAACCTGCATCAGCCGGTGCCGTTATCACTCTTCCTGGCAGGAGGTTTGAGATATTGTCTTTGTCGGGATCGTTCTTGCCGCCACCGGCTCCGCCGGGAGCTACAAGTTTGACTATCTTCCTTGCGGGCGGGCAAGGACAAATCGTCGGCGGGAATGTCGTTGGCTCTTTGATTGCTTCTGGACCGGTGATCGTAATTGCATCGTCGTTTACCAATGTTGCTTACGAGAGGTTGCCGTTGGATGAAGAGGAACAACCGTCTAACGACGGTGGTGGGAGCCTTGGCAACCCGTTTCCGGACCCGTCAGTTGGGTTGCCGTTCTTTAATCTGCCGTCGAACATGTCGGGAAATCAAAATCAGCTGCCTGTGGACGGATGGGGCGGAGGGAACTCCGGTGGGAGAGCATCTTATTGA 768 55.99 MAGLDLGSASHFVHQLQHRSVDLHLQHPTDVDDGSDHQPNSGGEIVARRSRGRPAGSKNKPKPPVIITRESANTLRAHILEVNSGCDVFDSVATYAQKRQRGICILSGTGSVTNVTLRQPASAGAVITLPGRRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQIVGGNVVGSLIASGPVIVIASSFTNVAYERLPLDEEEQPSNDGGGSLGNPFPDPSVGLPFFNLPSNMSGNQNQLPVDGWGGGNSGGRASY 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26394918 26396240 - Lsi05G019200.1 Lsi05g01920 664412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01920 255 MobiDBLite consensus disorder prediction 200 255 - -
Lsi05g01920 255 CDD DUF296 76 186 IPR005175 -
Lsi05g01920 255 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 255 IPR014476 GO:0003680
Lsi05g01920 255 Gene3D - 75 204 - -
Lsi05g01920 255 ProSiteProfiles PPC domain profile profile. 72 209 IPR005175 -
Lsi05g01920 255 SUPERFAMILY AF0104/ALDC/Ptd012-like 72 203 - -
Lsi05g01920 255 Pfam Plants and Prokaryotes Conserved (PCC) domain 76 190 IPR005175 -
Lsi05g01920 255 MobiDBLite consensus disorder prediction 26 65 - -
Lsi05g01920 255 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 255 - -
Lsi05g01920 255 MobiDBLite consensus disorder prediction 226 243 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01697 Lsi-Chr5:24537270 Lsi05g01920 Lsi-Chr5:26394918 1.06E-73 dispersed
Lsi05g01920 Lsi-Chr5:26394918 Lsi09g01252 Lsi-Chr9:20189174 6.64E-70 dispersed
Lsi08g01029 Lsi-Chr8:18881225 Lsi05g01920 Lsi-Chr5:26394918 6.26E-50 dispersed
Lsi06g01296 Lsi-Chr6:23506130 Lsi05g01920 Lsi-Chr5:26394918 1.41E-23 transposed
Lsi11g01313 Lsi-Chr11:21770634 Lsi05g01920 Lsi-Chr5:26394918 1.30E-73 transposed
Lsi05g01920 Lsi-Chr5:26394918 Lsi07g01210 Lsi-Chr7:17634644 5.69E-81 wgd
Lsi05g01920 Lsi-Chr5:26394918 Lsi09g01874 Lsi-Chr9:27553548 1.04E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01920 - - csv:101220959 442.965