Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01942 ATGGCAAGGCATTCGACAGTCTTTCTTGTTCTTCTTATTGTTCTTATTTTTCCATCGGATATTTTTTGTTATTCTGAAAAAGAAATAAAAAATTGGTGTAGCCAAACGCCATATCCAGCTCCATGTGAGGAATTTCTCAAAACCAAAGCCCCTACAAAAAAATCTCCAATTGCTAATAAATCCCATTTCTTTGAAATCTTAGTCGAAACGGCACTTGAACGTGCCGTTTCGGCCCATCAAAACGCTCTCTCTTACGGCCCAAAATGCCGAAATGCCAAAGAAAAAACCGCATGGACTGATTGCGTTGACCTCTACGACCAAATCGTAACCCGGCTCAACCGAACCACCGACCGCTGCACCTCGGTCGACGCACAAACCTGGCTCAGCGCCGCTCTCACCGCCCTCGAAACCTGCCGGACCGGGTTCGAGGAGCTCGGGGTTTCGACTTTCGGCTACTCATTGACGGCTAATAATGTTTCGAAGCTCATTAGCGATGGGTTGTCGGTGAATAAACCGGCGTCGCCGGAGGGGTTTGAACCGCCGAGCATGGCGGAGGGGTTTCCAACGTGGGTTAGGCCCGGTGACAGGAAATTGTTGCAATCTGGGTCTCCGAAGGCGAACGTGGTGGTGGCGCAGGATGGGTCTGGCAATTTTAAGACGGTGAAGGAGGCGGTGGCCGCAGCGAAGGGTGGCGGGAGATTTGTAATTTATGTGAAGGCGGGGGTTTATAGCGAGAATGTGGAGATTAAGGCTAAGAATGTTATGTTGATCGGAGATGGAATCGGAAAAACTGTCATCACCGGAAGTAGAAGTGTCGGCGGAGGTTCCACCACGTTCAGATCCGCCACCGTCGCCGTTGATGGGGACGGATTCATTGCGCGAGACATAACCTTCAGAAACACTGCCGGAGCGAAGAACCACCAGGCGGTAGCGCTCCGATCGGGTTCCGATCTCTCCGTCTTTTACCGCTGCGGCTTCGAAGGCTTTCAAGACACTCTCTACGTTTACGCCGAACGCCAATTCTACAAACAATGCGACATTTACGGCACCGTCGATTTCATCTTCGGCAACGCCGCCGTCGTAATCCAAGATTGCAACATCATCGCCCGCGATCCTCCCAATAAAACCATCACACTCACCGCCCAAGGCCGCTCCGATCCGAATCAGAACACCGGAATCTCCATCCACAATTGCAGAATCACGTCCGCCGGCGGCCTCAGCGGCGTCAAGGCCTATTTAGGCCGCCCATGGAGGCAGTATTCACGGACGGTTGTTATGAAATCGTCGATCGGAGGATTCATCAGTCCGGCCGGGTGGATGGAGTGGAGCGGTAATTTTGCCCTAAATACGCTTTATTACGGCGAGTATATGAATACGGGTCCGGGAGCGTCGACGGCGAATCGAGTGAAATGGAAGGGTTATCATGTGATTACTAGTGCGGCGGAGGCTTCGAAGTTCACCGTCGGGAATTTCATCGCCGGTGGATCTTGGTTGCCGAGTACCGGCGTGCCTTTCACCTCCGGCCTCTGA 1530 52.48 MARHSTVFLVLLIVLIFPSDIFCYSEKEIKNWCSQTPYPAPCEEFLKTKAPTKKSPIANKSHFFEILVETALERAVSAHQNALSYGPKCRNAKEKTAWTDCVDLYDQIVTRLNRTTDRCTSVDAQTWLSAALTALETCRTGFEELGVSTFGYSLTANNVSKLISDGLSVNKPASPEGFEPPSMAEGFPTWVRPGDRKLLQSGSPKANVVVAQDGSGNFKTVKEAVAAAKGGGRFVIYVKAGVYSENVEIKAKNVMLIGDGIGKTVITGSRSVGGGSTTFRSATVAVDGDGFIARDITFRNTAGAKNHQAVALRSGSDLSVFYRCGFEGFQDTLYVYAERQFYKQCDIYGTVDFIFGNAAVVIQDCNIIARDPPNKTITLTAQGRSDPNQNTGISIHNCRITSAGGLSGVKAYLGRPWRQYSRTVVMKSSIGGFISPAGWMEWSGNFALNTLYYGEYMNTGPGASTANRVKWKGYHVITSAAEASKFTVGNFIAGGSWLPSTGVPFTSGL 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26579296 26584583 - Lsi05G019420.1 Lsi05g01942 664434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01942 509 SMART PMEI_2 24 169 IPR006501 GO:0004857
Lsi05g01942 509 TIGRFAM PME_inhib: pectinesterase inhibitor domain 3 165 IPR006501 GO:0004857
Lsi05g01942 509 CDD PMEI-like_3 32 174 - -
Lsi05g01942 509 Pfam Plant invertase/pectin methylesterase inhibitor 28 165 IPR006501 GO:0004857
Lsi05g01942 509 Gene3D Invertase/pectin methylesterase inhibitor family protein 23 171 IPR035513 -
Lsi05g01942 509 PANTHER PECTINESTERASE 7 508 - -
Lsi05g01942 509 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 170 IPR035513 -
Lsi05g01942 509 SUPERFAMILY Pectin lyase-like 204 508 IPR011050 -
Lsi05g01942 509 ProSitePatterns Pectinesterase signature 2. 347 356 IPR033131 -
Lsi05g01942 509 Gene3D - 202 509 IPR012334 -
Lsi05g01942 509 Pfam Pectinesterase 207 494 IPR000070 GO:0030599|GO:0042545
Lsi05g01942 509 PANTHER PECTINESTERASE 7 508 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01942 Lsi-Chr5:26579296 Lsi09g00498 Lsi-Chr9:5184085 0 dispersed
Lsi05g01942 Lsi-Chr5:26579296 Lsi05g01943 Lsi-Chr5:26597113 5.24E-128 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01942 K01051 - csv:101217552 939.102