Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01943 ATGCCCTTTTCCTTCGCTACCTTTCTTCTCCTCTTCTTACCCCTGGCAGTGGTGGCTTCCTCTAATTCTTCGTTGCCCGAGCTGGACCCGGTTCGATTGGCCCAGGCCGGGGTTAGGGAAGCCAGAATCGGAATAGCTAATTTAAAACGACAACGGTTTGGACGTCGGAATCTGCAGGCCGCACTTGCCGATTGCGCTACGCTCTACGAGGAGGCCGACTGGAGGCTCGCCGGGATGTTGGTTGGAGAGAATTATACGGCGGAAGATGCTCGGACGTGGGTTAGCGCCGCCGTCGCTAACCATCGGAGTTGCTTGGATGGCTTGGAAGAGGTCGGCGCTGCGGCGGCGGTGGATGGGAATAACTTGACCGTGTTGCTCACCGGAGCTCTGCATTTATACGACAAGATTGCAGCCGTGGAGCAGCGGAATGGTAAGCACCTGCTACCCACAGGAATCAACTTGGCGAAATGGGATACGGCCACGTCGAAGGCGGATTATGTGGTGGCGAAGGATGGCTCCGGCACCCACACAACCATAAACGGCGCGGTGGCGGCTCTGGCGAGGACTGGACGGAGACGCCGGGGGGAGAGAATTGTGATATACGTGAAAGCCGGAGTTTACAAGGAGAATGTGGAAATTGGAATACAGTTGAATAACGTCATGGTTGTCGGCGACGGCGCAGACAAAACCATCGTCACCGGTAGCCGCAACGTGCCCGACGGCGCCACCACTTATAACTCAGCTACATTTGGTGTTTCCGGCGACGGATTTTGGGCGAGGGACATAACATTCGAGAACACCGCTGGACCGGAAAAGCAACAGGCGGTGGCGCTACGGCTGAATTCCGACCTTGCCGTCGTATACCGGTGCGTAATAAAAGGCTATCAGGACACCCTCTTCCTCCACTCCCTCCGCCAATTCTACCGCGACTGCCAAATATACGGCACCGTCGATTTCATCTTCGGAAACTCCGCCGCCGTCCTCCAGAACTGCGAAATCTTCGTACGACGGCCGATTCGCCACCAGGCCAACATGATCACCGCCCAAGGTCGCGATGATCCGGCCGAGGCCACCGGAATTTCCATCCTCAACTCCAGAGTCCGGCCGACGCCGGATTTCGCTCACGTTAAGGCTCAGTACAGGACCTACCTCGGCCGCCCCTGGAAGCGGTTTTCGAGGACGGTGGTTATGGCGACTGATTTGGACGGATTGGTCGACCCGAAAGGGTGGGGAGAATGGAGGGGGGATTTTGCGATTTCGACTCTGTTTTATGCAGAGTTTAAGAACAGGGGCAGCGGTTCTTCGACGAGATTTAGGGTTAATTGGCCGGGATTTCACGTCCTCCGGAGTTCGGAGGAGGCGCGGCCTTTCACGGTGGCTGAATTTCTTCACGGCGGCGCTTGGATTCCGGCTACTGGCGTACCCTTCGAGGCGGGAGTTTGA 1443 57.03 MPFSFATFLLLFLPLAVVASSNSSLPELDPVRLAQAGVREARIGIANLKRQRFGRRNLQAALADCATLYEEADWRLAGMLVGENYTAEDARTWVSAAVANHRSCLDGLEEVGAAAAVDGNNLTVLLTGALHLYDKIAAVEQRNGKHLLPTGINLAKWDTATSKADYVVAKDGSGTHTTINGAVAALARTGRRRRGERIVIYVKAGVYKENVEIGIQLNNVMVVGDGADKTIVTGSRNVPDGATTYNSATFGVSGDGFWARDITFENTAGPEKQQAVALRLNSDLAVVYRCVIKGYQDTLFLHSLRQFYRDCQIYGTVDFIFGNSAAVLQNCEIFVRRPIRHQANMITAQGRDDPAEATGISILNSRVRPTPDFAHVKAQYRTYLGRPWKRFSRTVVMATDLDGLVDPKGWGEWRGDFAISTLFYAEFKNRGSGSSTRFRVNWPGFHVLRSSEEARPFTVAEFLHGGAWIPATGVPFEAGV 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26597113 26600159 + Lsi05G019430.1 Lsi05g01943 664435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01943 480 Pfam Plant invertase/pectin methylesterase inhibitor 31 114 IPR006501 GO:0004857
Lsi05g01943 480 CDD PMEI-like_4 3 133 - -
Lsi05g01943 480 Gene3D - 162 480 IPR012334 -
Lsi05g01943 480 SMART PMEI_2 13 132 IPR006501 GO:0004857
Lsi05g01943 480 Pfam Pectinesterase 165 465 IPR000070 GO:0030599|GO:0042545
Lsi05g01943 480 Gene3D Invertase/pectin methylesterase inhibitor family protein 19 136 IPR035513 -
Lsi05g01943 480 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 114 IPR035513 -
Lsi05g01943 480 SUPERFAMILY Pectin lyase-like 160 478 IPR011050 -
Lsi05g01943 480 ProSitePatterns Pectinesterase signature 2. 313 322 IPR033131 -
Lsi05g01943 480 PANTHER PECTINESTERASE 8 479 - -
Lsi05g01943 480 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 36-RELATED 8 479 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01943 Lsi-Chr5:26597113 Lsi09g00673 Lsi-Chr9:7603919 1.29E-140 dispersed
Lsi05g01942 Lsi-Chr5:26579296 Lsi05g01943 Lsi-Chr5:26597113 5.24E-128 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01943 K01051 - csv:101217635 787.334