Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi05g01962 | ATGGAAGAGAGAGAAGCCATAAATGCAGGAGTAACAGTGATAGGAGCCGAAGCTCCGTCGGCTTATCACGTGGCTCCCAGAACCGAGAACCCGCCGGCCGGCGGCGGTTCTCCAACCGTCGCCGCCTCGCCGGTAAGCGTGGGGCTGCCCGGAACTGGAACCACAGGGAAAAAGAAGCGGGGTAGACCTAGAAAGTACGGCCCAGATGGAACGGTAACCATGGCATTGTCGCCATTGCCGCTTTCTTCCTCAGCTCCGGCGGCCGGTGGATTCTCCATTACCAAGCGGGGGAAGGGCCGGCTCGGCGGCTCCGAATTCAAGCATCACAAGAAAATGGGAATGGAATATATAGGAGAATGGAATGCGTGTTCTGTCGGTACAAATTTCATGCCTCATATCATCACGGTCAATGCTGGCGAGGACGTCACTATGAAGATCATATCATTTTCCCAACAAGGCCCTCGAGCAATCTGTATTCTTTCTGCTAACGGAGTAATTTCGAATGTCACTCTTCGGCAGCCCGATTCTTCGGGTGGTACTTTAACATATGAGGGTCGTTTCGAGATACTTTCTTTGTCTGGATCATTCATGCCTACTGAAAATCAAGGAACAAGAAGCAGGTCGGGTGGGATGAGCGTCTCCTTGGCAAGTCCGGATGGTCGTGTTGTTGGGGGAGGGGTAGCTGGTTTACTCATAGCTGCAAGCCCAGTACAGGTTGTGGTAGGGAGTTTTCTACCAACTAGCCAACAGGAGCAGAAGGTAAAGAAACAGAAGCCCGAGTCGGTACCAGCTGCAGCCCCTGTTGCTGTCCTGAGCACGGCACCAGCCACCACTGTGCCGACTTCCAATGCTGATACAGATGACAGTTTAAATGGGAATGGTCTGCAAAATCCCGGGTCGTTAAAACCGGCCAGTTTTGCTCCTTCGCCTTTCCAGAGAGACAATTGGGGTACCAATGCTACTGTGCATTCCTTGCAGGAGCCGAGAAATTCCGCTACCGACATCAATATATCGCTGCCAGGCTAA | 1026 | 52.63 | MEEREAINAGVTVIGAEAPSAYHVAPRTENPPAGGGSPTVAASPVSVGLPGTGTTGKKKRGRPRKYGPDGTVTMALSPLPLSSSAPAAGGFSITKRGKGRLGGSEFKHHKKMGMEYIGEWNACSVGTNFMPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTENQGTRSRSGGMSVSLASPDGRVVGGGVAGLLIAASPVQVVVGSFLPTSQQEQKVKKQKPESVPAAAPVAVLSTAPATTVPTSNADTDDSLNGNGLQNPGSLKPASFAPSPFQRDNWGTNATVHSLQEPRNSATDINISLPG | 341 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 26747752 | 26752310 | - | Lsi05G019620.1 | Lsi05g01962 | 664454 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi05g01962 | 341 | PANTHER | AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN | 1 | 340 | - | - | |
| Lsi05g01962 | 341 | CDD | DUF296 | 131 | 244 | IPR005175 | - | |
| Lsi05g01962 | 341 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 129 | 250 | - | - | |
| Lsi05g01962 | 341 | Gene3D | - | 131 | 260 | - | - | |
| Lsi05g01962 | 341 | MobiDBLite | consensus disorder prediction | 276 | 303 | - | - | |
| Lsi05g01962 | 341 | MobiDBLite | consensus disorder prediction | 311 | 341 | - | - | |
| Lsi05g01962 | 341 | MobiDBLite | consensus disorder prediction | 23 | 70 | - | - | |
| Lsi05g01962 | 341 | MobiDBLite | consensus disorder prediction | 276 | 341 | - | - | |
| Lsi05g01962 | 341 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 131 | 244 | IPR005175 | - | |
| Lsi05g01962 | 341 | ProSiteProfiles | PPC domain profile profile. | 126 | 266 | IPR005175 | - | |
| Lsi05g01962 | 341 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 1 | 340 | IPR039605 | GO:0003680 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi05g01307 | Lsi-Chr5:20815809 | Lsi05g01962 | Lsi-Chr5:26747752 | 4.49E-73 | dispersed | |
| Lsi05g01962 | Lsi-Chr5:26747752 | Lsi09g00539 | Lsi-Chr9:5661639 | 3.07E-90 | dispersed | |
| Lsi07g01209 | Lsi-Chr7:17617563 | Lsi05g01962 | Lsi-Chr5:26747752 | 2.98E-38 | transposed | |
| Lsi05g01962 | Lsi-Chr5:26747752 | Lsi09g00368 | Lsi-Chr9:3836578 | 7.66E-110 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi05g01962 | - | - | csv:101212918 | 564.688 |