Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi05g01968 | ATGGATCGAGCCACCGCCGCACACGGCCGTCCACTTCCGCCGCCGTTCATTTCAAGAAACCTCCATCTCAATCCCCACCACCATTACCTCCACCAAAACTCCGATCAACAGCACAATGAAAATAGTAGCTCCGGCGGCGATGGCGGCCGAGACGGCGAGGTTTTGAGACGACCACGCGGCCGCCCCGCCGGCTCGAAGAACAAGCCGAAGCCGCCAATGATAATCACACGTGATAGCGCCAACGCACTCCGGTGCCACGTCATCGAAATCGCCAACGCCAACGACGTGATCGAAACCCTTACGATTTTCGCACGAAAGCGCCAGCGTGGCATTTGCGTTCTGACCGGCGCCGGAGCGGTCACCAACGTCACCCTCAAGCAGCCGGGCGCCGCAGTCGCCGTCTCTGGACCGGTGATCTCTCTGCCAGGGAGATTCGAGATTCTGTCGTTGTCGGGGTCGTTTCTGCCACCGCCAGCGCCGGCGGCGGCGTCTGGGCTGACCGTGTATTTGTCCGGTGGGCAGGGGCAGGTGGTAGGAGGAAGCGTGGTGGGCCCACTTTTGAGTTCGGGGCCAGTGGTGATTACGGCTGCTTCATTCGGAAACGCAGCGTACGAGAGGCTGCCGGTGGAGGATGATGACGTGGAAGCGGCTACAGCGGCGGATGCTGGAAGTAGTCCGATCAGGTCACCGGAAACCGCCGTGCAACAGCAACAATTTTTGCCGGAACTTCATGGATTGGCGCCGCATCTAATGAACACGTGTCAATTGCCGACGGAACCCTACTGGGGCACAGGTCGTACTCCACCATTTTAG | 813 | 60.15 | MDRATAAHGRPLPPPFISRNLHLNPHHHYLHQNSDQQHNENSSSGGDGGRDGEVLRRPRGRPAGSKNKPKPPMIITRDSANALRCHVIEIANANDVIETLTIFARKRQRGICVLTGAGAVTNVTLKQPGAAVAVSGPVISLPGRFEILSLSGSFLPPPAPAAASGLTVYLSGGQGQVVGGSVVGPLLSSGPVVITAASFGNAAYERLPVEDDDVEAATAADAGSSPIRSPETAVQQQQFLPELHGLAPHLMNTCQLPTEPYWGTGRTPPF | 270 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 26816488 | 26817300 | + | Lsi05G019680.1 | Lsi05g01968 | 664460 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi05g01968 | 270 | Gene3D | - | 83 | 218 | - | - | |
| Lsi05g01968 | 270 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 84 | 200 | IPR005175 | - | |
| Lsi05g01968 | 270 | MobiDBLite | consensus disorder prediction | 1 | 74 | - | - | |
| Lsi05g01968 | 270 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 80 | 213 | - | - | |
| Lsi05g01968 | 270 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 34 | 270 | IPR014476 | GO:0003680 | |
| Lsi05g01968 | 270 | ProSiteProfiles | PPC domain profile profile. | 80 | 220 | IPR005175 | - | |
| Lsi05g01968 | 270 | CDD | DUF296 | 84 | 155 | IPR005175 | - | |
| Lsi05g01968 | 270 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 | 34 | 270 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi05g01968 | Lsi-Chr5:26816488 | Lsi09g01252 | Lsi-Chr9:20189174 | 1.23E-64 | dispersed | |
| Lsi05g01968 | Lsi-Chr5:26816488 | Lsi09g01903 | Lsi-Chr9:27888660 | 1.47E-76 | wgd | |
| Lsi05g01968 | Lsi-Chr5:26816488 | Lsi09g00365 | Lsi-Chr9:3772128 | 4.88E-68 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi05g01968 | - | - | bhj:120093013 | 439.499 |